Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 143 6e-29 seq4 100 7e-16 seq136 98.7 2e-15 >seq2 Length=28345163 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || |||||||| || | || || ||| ||| || Sbjct 27365624 CAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCGGAT 27365565 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || |||||||| ||||| || || || ||||| |||||| Sbjct 27365564 ACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAGCAA 27365505 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| |||||||||||| | || || || | || || | |||||||| | Sbjct 27365504 CGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATATT 27365445 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || || || ||| Sbjct 27365444 CAAAAAGAATCGACGCTTCACCTGGTT 27365418 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||||||||| | || |||||| || || Sbjct 27365942 CAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCTGAT 27365883 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| || || ||||||||||||||||| || |||||||| || Sbjct 27365882 ACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAACAG 27365823 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 27365822 CGATTGATCTTCGCTGG 27365806 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| ||||| | || |||||| || || Sbjct 27366462 CAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCTGAT 27366403 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||||| ||||||||||| ||||| || ||||| ||||| Sbjct 27366402 ACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAGCAG 27366343 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || ||||| || Sbjct 27366342 CGATTGATTTTCGCTGG 27366326 >seq4 Length=16644688 Score = 100 bits (110), Expect = 7e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| | || || || ||||| ||||| ||||| ||| Sbjct 3142698 AAAATGC---AAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAA 3142754 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||| || || || |||||||| || || || ||||| || Sbjct 3142755 TCGTCTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCT 3142814 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||||||||||||||| || || || || Sbjct 3142815 GACCAGCAACGACTTATTTTTGCAGGTAA 3142843 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | ||||||||||| || ||| | || || || || || || || ||||| ||| Sbjct 10332810 AAATCATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAAT 10332751 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 ||| || || || || || || ||| |||||||||||||||||||| || ||||| | Sbjct 10332750 CCTCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAG 10332691 Query 178036 ACCAGCAACGACTTATCTTCGCCGG 178060 | ||||| ||| | || || || || Sbjct 10332690 ATCAGCAGCGATTGATTTTTGCAGG 10332666 >seq136 Length=9508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||| | ||||| ||||| ||||| | || || ||| ||| || Sbjct 6051 CAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCTGAT 6110 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| |||||||||||||| ||||| || |||||| Sbjct 6111 ACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAA 6170 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 6171 CGTCTTATTTTTGCTGG 6187 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || || ||||||||||| | || ||||| || || Sbjct 5661 CAAATTTTTGTGAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 5720 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||| |||| || ||| || ||||||||||||| ||||| || | || || || Sbjct 5721 ACCATCAAGAATGTTAAAACGAAAATTCAGGACAAAGGGGGAATTCCATCAGATCAACAG 5780 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||| |||| Sbjct 5781 CGCTTGATCTTCTCCGG 5797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720805028756