Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 6e-29
seq4 100 7e-16
seq136 98.7 2e-15
>seq2
Length=28345163
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || || |||||||| || | || || ||| ||| ||
Sbjct 27365624 CAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCGGAT 27365565
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || ||| || |||||||| ||||| || || || ||||| ||||||
Sbjct 27365564 ACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAGCAA 27365505
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| |||||||||||| | || || || | || || | |||||||| |
Sbjct 27365504 CGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATATT 27365445
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||||||||| || || || || |||
Sbjct 27365444 CAAAAAGAATCGACGCTTCACCTGGTT 27365418
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || |||||||| || || ||||||||||| | || |||||| || ||
Sbjct 27365942 CAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCTGAT 27365883
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || ||| || || ||||||||||||||||| || |||||||| ||
Sbjct 27365882 ACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAACAG 27365823
Query 178044 CGACTTATCTTCGCCGG 178060
||| | |||||||| ||
Sbjct 27365822 CGATTGATCTTCGCTGG 27365806
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||||||| || || ||||| ||||| | || |||||| || ||
Sbjct 27366462 CAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCTGAT 27366403
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| ||| ||||| ||||||||||| ||||| || ||||| |||||
Sbjct 27366402 ACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAGCAG 27366343
Query 178044 CGACTTATCTTCGCCGG 178060
||| | || ||||| ||
Sbjct 27366342 CGATTGATTTTCGCTGG 27366326
>seq4
Length=16644688
Score = 100 bits (110), Expect = 7e-16
Identities = 112/149 (75%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||| ||||||||||| | || || || ||||| ||||| ||||| |||
Sbjct 3142698 AAAATGC---AAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAA 3142754
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || || ||||| || || || |||||||| || || || ||||| ||
Sbjct 3142755 TCGTCTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCT 3142814
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
||||||||||||||||| || || || ||
Sbjct 3142815 GACCAGCAACGACTTATTTTTGCAGGTAA 3142843
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975
|||| | ||||||||||| || ||| | || || || || || || || ||||| |||
Sbjct 10332810 AAATCATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAAT 10332751
Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035
||| || || || || || || ||| |||||||||||||||||||| || ||||| |
Sbjct 10332750 CCTCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAG 10332691
Query 178036 ACCAGCAACGACTTATCTTCGCCGG 178060
| ||||| ||| | || || || ||
Sbjct 10332690 ATCAGCAGCGATTGATTTTTGCAGG 10332666
>seq136
Length=9508
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||| | ||||| ||||| ||||| | || || ||| ||| ||
Sbjct 6051 CAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCTGAT 6110
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||||| |||||||||||||| ||||| || ||||||
Sbjct 6111 ACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAA 6170
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 6171 CGTCTTATTTTTGCTGG 6187
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||||||||| || || ||||||||||| | || ||||| || ||
Sbjct 5661 CAAATTTTTGTGAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 5720
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||| |||| || ||| || ||||||||||||| ||||| || | || || ||
Sbjct 5721 ACCATCAAGAATGTTAAAACGAAAATTCAGGACAAAGGGGGAATTCCATCAGATCAACAG 5780
Query 178044 CGACTTATCTTCGCCGG 178060
|| | |||||| ||||
Sbjct 5781 CGCTTGATCTTCTCCGG 5797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203720805028756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |