Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5384 109 5e-19 seq8974 91.5 1e-13 seq914 91.5 1e-13 seq915 82.4 7e-11 seq912 82.4 7e-11 >seq5384 Length=661 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| |||||||||||||||||||| |||||||||||||| || || Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| |||||||| | |||||| || | || | || |||||||| ||| Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || ||||| || ||||| Sbjct 385 GTCTTGACAAAGATTTGCAT 404 >seq8974 Length=654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| | |||||||||||||||||||| || |||||||||||||| || || Sbjct 250 CCGGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCC 309 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||||| | |||||| || | || | || || || || ||| Sbjct 310 TTCACATTCTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTGAGA 369 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || ||||| |||||||| Sbjct 370 GTCTTGACAAAGATCTGCAT 389 >seq914 Length=7636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| |||||||||||||||||||| || |||||||| || || || Sbjct 2659 CCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATTCCCTCCTTATCCTGGATCTTGGCC 2600 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | | ||||||||||| ||| | || || || || ||| Sbjct 2599 TTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATAGTCTTACCAGTGAGA 2540 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || ||||| || ||||| Sbjct 2539 GTCTTGACAAAGATTTGCAT 2520 >seq915 Length=7668 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| ||||||||||||||||||| || || || ||||||||||| || || Sbjct 3916 CCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCC 3857 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| | | ||| ||||| | ||| | || || ||||| ||| Sbjct 3856 TTCACATTCTCGATGGTGTCGGAGGCCTCAACCTCAAGGGTGATAGTCTTTCCGGTGAGA 3797 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| Sbjct 3796 GTCTTGACGAAGATTTGCAT 3777 >seq912 Length=596 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| | ||||||||||||||||| || || || |||||||| || || || Sbjct 366 CCGGCGAAAATGAGACGCTGCTGATCAGGGGGAATTCCCTCCTTATCCTGGATCTTAGCC 307 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| ||||| | | ||||||||||| ||| | ||| || ||||| || Sbjct 306 TTCACGTTCTCGATCGTGTCAGAGGCCTCGACCTCGAGGGTGATCGTCTTTCCGGTGAGT 247 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 246 GTCTTGACGAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433770246296884