Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6360 91.5 2e-13 seq3446 91.5 2e-13 seq9142 89.7 6e-13 seq7778 89.7 6e-13 seq1741 89.7 6e-13 seq3844 87.8 2e-12 seq3621 87.8 2e-12 seq11154 86.0 7e-12 seq11035 86.0 7e-12 seq10638 86.0 7e-12 seq9640 86.0 7e-12 seq3914 86.0 7e-12 seq1974 86.0 7e-12 seq1438 86.0 7e-12 seq9313 84.2 3e-11 seq5963 84.2 3e-11 >seq6360 Length=2026 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 517 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 576 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 577 TACTCACCACTATACTACCGAGGAT 601 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 85 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 26 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 25 CACCACTATACTACCGAGGA 6 >seq3446 Length=4969 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 238 AAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 297 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 298 CACCACTATACTACCGAGGA 317 >seq9142 Length=5514 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 1562 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1621 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 1622 TACTCACCACTATACTACCGAGGA 1645 >seq7778 Length=2527 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 747 ATGCAAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 806 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 807 TACTCACCACTATACTACCGAGGA 830 >seq1741 Length=1269 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 371 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 312 Query 60118 CACCACTATACTACCGAGGATTGA 60141 ||||||||||||||||||||| || Sbjct 311 CACCACTATACTACCGAGGATCGA 288 >seq3844 Length=4313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| ||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4236 AAAAATTCTCTCC--GGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 4179 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 4178 TCACCACTATACTACCGAGGAT 4157 >seq3621 Length=954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60042 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101 ||| ||| || | | |||| |||||| |||| |||||| |||||| |||||| | || Sbjct 920 AAAATAAAGTAAAAGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGT 861 Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| || ||||||||||||||||||||||||| Sbjct 860 GACAGACGCGGATACTCACCACTATACTACCGAGGA 825 >seq11154 Length=3326 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 1003 AAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 1062 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 1063 CACCACTATACTACCGAGGA 1082 >seq11035 Length=1520 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 675 AAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 616 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 615 CACCACTATACTACCGAGGA 596 >seq10638 Length=2593 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 895 AAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 954 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 955 CACCACTATACTACCGAGGA 974 >seq9640 Length=6604 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| ||||||||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 6526 TTCTCCCCGGCAGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 6467 Query 60124 TATACTACCGAG 60135 |||||||||||| Sbjct 6466 TATACTACCGAG 6455 >seq3914 Length=7276 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 622 AAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 681 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 682 CACCACTATACTACCGAGGA 701 >seq1974 Length=4162 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 932 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 873 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 872 CACCACTATACTACCGAGGA 853 >seq1438 Length=3217 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 2445 AAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 2386 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 2385 CACCACTATACTACCGAGGA 2366 >seq9313 Length=5281 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| ||| || |||||| | ||||||| || |||| Sbjct 5217 AAAAAAATTCTCCCCGGCCGGGAATTGAAGCCAGGTCTCGCATGTGACAGACGCGGATAC 5158 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 5157 TCACCACTATACTACCGAGGA 5137 >seq5963 Length=1002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/82 (84%), Gaps = 4/82 (5%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG--GCGGACATA 60115 |||| |||||| |||| |||||| |||||| |||||| | ||||||| ||||||| Sbjct 969 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGACA-- 912 Query 60116 CTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| Sbjct 911 CTCACCACTATACTACCGAGGA 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571736280389560