Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq4798 114 3e-21 >seq4798 Length=3577 Score = 114 bits (126), Expect = 3e-21 Identities = 249/374 (67%), Gaps = 24/374 (6%) Strand=Plus/Plus Query 29076 ACCACTGCAGAAGGAGTAGATCCGTGGGACATGAACCTGAATGGAAAGTTGAAAAGCAGC 29135 ||||| ||| | ||| || |||||| || |||| || |||||||||||||| |||| Sbjct 1684 ACCACAGCATTAAGAGGTGAGTCGTGGGTAATCAACCAGAGTGGAAAGTTGAAAAACAGC 1743 Query 29136 CCCGCTGGCTGGTGGCTGCGATTAAAAAGACGATTTCCAGTCTGCATGGCGGTTATGAAG 29195 | ||||||||||||||||| | || || || | | | | ||| || ||||||| Sbjct 1744 CTGCGTGGCTGGTGGCTGCGATCAGAAGAACTATCGCTGATTTACCTGGTGGCTATGAAG 1803 Query 29196 AAGCTGCGGAA-----TGG-----------CTG--GATGTCACC------AAAGATGCTC 29231 ||||||| ||| ||| ||| || || ||| | ||| | Sbjct 1804 AAGCTGCTGAAATCCTTGGGGTATATAAATCTGATGACGTAACCCCGGCAACCGATCCAT 1863 Query 29232 TGTTTAACCGCCTGCGTACTGGTGGTGATCAGATCTTCCCGATTGGGTGGGCGCTGGTAC 29291 || |||||| || |||||| |||||||| ||||||||| | || |||||| |||| Sbjct 1864 TGCATAACCGACTTCGTACTACCGGTGATCAAATCTTCCCGTTGGGATGGGCGATGGTCT 1923 Query 29292 TGCAACGTGCCGGAGGAACCTATCACCTGGCACATTCAGTAGCCAGGGCATCAGGTGGCG 29351 | || ||| || || | | || | ||| || | || ||| || || || Sbjct 1924 TACAGGCTGCTGGTGGTTCAAACCATATCGCAAATGCTGTTGCCCGGAACTCGAACGGTC 1983 Query 29352 TTTTTGTTCCGCTGGCAGATATGGAAGAAGTGGATAACGCAGATATTAATCAGCGCCTGC 29411 | ||||| || |||| ||| | || || || |||||||| || || ||||||||||| Sbjct 1984 TATTTGTGCCATTGGCCGATGTTGATGATGTTGATAACGCCGACATCAATCAGCGCCTTA 2043 Query 29412 TGGAAGCGATTGAG 29425 ||||| | || ||| Sbjct 2044 TGGAATCCATCGAG 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128337858971814