Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq9999 392 2e-104 >seq9999 Length=7021 Score = 392 bits (434), Expect = 2e-104 Identities = 656/944 (69%), Gaps = 6/944 (1%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 || ||||| | || | || || |||||||| |||||| |||||||| || || || Sbjct 943 GCGGAACAGTCGGTGTTGGGCGGTTTAATGCTGGATAACGAACGCTGGGACGATGTCGCC 884 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456 || ||| | || || || |||||||||||| | | || || | || |||| || ||| Sbjct 883 GAGCGTGTGGTGGCGGAGGATTTTTATACCCGACCGCACCGGCATATCTTCACGGAAATG 824 Query 71457 GAGAGGTTATTAAGTCATGGC-AAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515 | | | | | |||| ||||| || ||| |||| || || |||||| | || || Sbjct 823 CATCGCCTGC-AGGAGATGGGGAAACCCATCGATCTGATCACGCTCGCTGAATCGCTGGA 765 Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575 | || || | || ||| ||| |||||||| || || || ||| | || || || Sbjct 764 GGTTCAGGGGCAACTGGACAGCGTCGGCGGTTTTGCTTATCTGGCTGAGTTATCTAAAAA 705 Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635 ||||| || |||| |||||| | |||||||| ||||| || || ||||| || ||||| Sbjct 704 TACGCCAAGTGCGGCGAATATTAGCGCTTATGCTGATATTGTCCGAGAACGTGCAGTTGT 645 Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATGCGCAGGATGGCAG 71695 |||||| |||||||| ||||| |||||||| || |||||||| | || | | ||| | Sbjct 644 TCGTGACATGATTTCGGTCGCGAATGAAATCGCGGAAGCTGGGTTTGATCCACAAGGCCG 585 Query 71696 GGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACG 71755 ||| | || ||||||| | || || |||||| ||| |||| || |||| || Sbjct 584 TTCCAGTGAAGATCTGCTGGACCTTGCGGAATCCCGCGTCTTTAAAATTGCAGAAAGCCG 525 Query 71756 A--CAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATCT 71813 ||| | || | || | || ||| ||||| || | ||||| ||||| || | Sbjct 524 CGCCAACAAAGACGAAGGG--CCGAAAAATATCACCGATGTGCTCGACGCAACCGTCGCG 467 Query 71814 CGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGGGATTT 71873 || || || |||| || |||| || || || || || || ||| | | || || | | Sbjct 466 CGTATCGAGCAGTTATTCCAGCAGCCGCACGACGGCGTCACCGGGGTAAACACCGGTTAT 407 Query 71874 ACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCC 71933 ||| || ||||| |||||||| || | |||||||| || | || ||||||||||| Sbjct 406 GACGACCTTAATAAAAAGACGGCTGGTTTGCAGCCGTCAGACTTAATTATTGTCGCCGCG 347 Query 71934 CGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGT 71993 || || || ||||| || || || ||||| ||||| |||||||||||||| || | Sbjct 346 CGTCCGTCGATGGGTAAAACGACATTTGCAATGAACCTCGTCGAAAATGCGGCGATGTTG 287 Query 71994 AACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGC 72053 | |||||||| || | | || || ||||| ||||| | ||| | |||||||| Sbjct 286 CAGGATAAGCCGGTTCTTATCTTCAGTCTTGAAATGCCCTCAGAACAGATCATGATGCGT 227 Query 72054 TCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGAC 72113 || ||||| || || ||||||| || || || ||||| || || ||||| | || Sbjct 226 TCCCTGGCCTCGCTCTCACGCGTAGACCAAACCAAAATTCGTACTGGTCAACTGGATGAT 167 Query 72114 GAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTT 72173 ||||| |||||||| |||| || ||||||||||| || |||| || | || || | | Sbjct 166 GAGGACTGGGCGCGAATTTCCGGAACAATGGGTATTTTGCTGGAGAAACGAAACATCTAT 107 Query 72174 ATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTAT 72233 ||||||||||| || ||||||||| || || | || || || ||||||||| | Sbjct 106 ATTGATGACTCCTCCGGCCTGACGCCAACGGAAGTGCGCTCGCGTGCTCGTCGTATCGCC 47 Query 72234 AAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCA 72277 ||| | || || | | | || ||||||||||||||||| Sbjct 46 CGTGAACACGGCGGCATCGGACTTATCATGATCGACTACCTGCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303193154260017