Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1056 161 2e-35 >seq1056 Length=10972 Score = 161 bits (178), Expect = 2e-35 Identities = 183/243 (75%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || |||||||| |||||||||||||| || || Sbjct 9836 GCCAAGCGCCATCGCAAGGTC-CTTCGCGACAACATCCAGGGAATCACCAAGCCCGCCAT 9894 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || || ||||| ||||| ||||| |||| || || |||| || |||| Sbjct 9895 CCGTCGTCTTGCCCGCCGTGGAGGAGTGAAGCGCATCTCCGGTCTGATCTACGAGGAGAC 9954 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| ||| Sbjct 9955 CCGCGGAGTCCTGAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACTGCGA 10014 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| ||||||| || | || ||||| || Sbjct 10015 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 10074 Query 16672 CCG 16674 || Sbjct 10075 TCG 10077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064797929261