Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq9716 572 5e-159 >seq9716 Length=6568 Score = 572 bits (634), Expect = 5e-159 Identities = 871/1236 (70%), Gaps = 42/1236 (3%) Strand=Plus/Plus Query 40521 TGCAGCGACGCTGCAACGTCTTCGCCAGCGCCCGGCGTGGCGTTTCCGG--CGGTAGCGC 40578 |||||||| ||||| || || |||||||| ||||||||| | || ||| ||||| Sbjct 5357 TGCAGCGAGGCTGCGACTTCAGGGCCAGCGCGCGGCGTGGCCC--CAGGATCGGCAGCGC 5414 Query 40579 CCGGCTTACCGTCG---AATAGGGCTTTGAGCGCATCACGGCGCATGGACCGGGAATACC 40635 ||||| | |||| | || |||||||||| |||||| | |||| || || ||||| | Sbjct 5415 CCGGCGTGCCGTTGGAAAACAGGGCTTTGAACGCATCTCTGCGCGCGGTGCGCGAATAGC 5474 Query 40636 CGGCGCGCGCCATCGACGCTTCGATGAGCGCCATTGCCTTGCG---GCCGGAGCTCGTGT 40692 |||| ||||| || || ||||| ||||||| | |||||| ||| || || Sbjct 5475 CGGCCTTGGCCATTGAGGCCTCGATCAGCGCCAGCGGCTTGCGCGCGCCAGA-----TGC 5529 Query 40693 TTGTATCCATG---GCAATAGGTGCGCTGTCGAGCTTGCCCGTCGCGAATCCGTCTTTGA 40749 ||| || || | || | |||| ||| ||| || ||||| ||||| | || Sbjct 5530 TTGGG-CCGTGCGGGTTATCTCCGAGCTGGGCAGCAGGCCAGTGGCGAAGCCGTCATCGA 5588 Query 40750 CCGCCTGATCGGCACCGATCCACGTTTCCTTGTCCATCATGGCGGCGGCCGTCTCTTCCG 40809 | || || | ||||||||||||||||| ||||||| | |||| | || | Sbjct 5589 CTGCTTGTTGCGCACCGATCCACGTTTCGCGATCCATCAGCATCGAGGCCTCAGCCTCGG 5648 Query 40810 AGATGCCGGCCCGTTGCGCATACAGCTTTGCCATTGCCGCATCGAACGGCGCGAGCGTCG 40869 ||| |||| || || ||||||||| ||||| || |||||||||||||| ||| | Sbjct 5649 TGATCCCGGAGCGGTGGGCATACAGCGCAGCCATCGCGGCATCGAACGGCGCCAGCACGG 5708 Query 40870 CTGCAGCGGCCGCCATGTCGTGACGGTTCCCAATTGCGACGGCCCATGCGTTGTGAATCA 40929 | || | | | | ||||||||| ||||| || | || |||||||| |||||||| |||| Sbjct 5709 CGGCTGTGTCGGTCATGTCGTGGCGGTTTCCGACGGCCACGGCCCAGGCGTTGTGGATCA 5768 Query 40930 TCAGAAACGCGCCGTCACCNNNNNNNNNNNNNNNNNNNNNNNNNGCGATGACCGAGGCTG 40989 |||| |||| ||| ||||| || || ||||| || Sbjct 5769 TCAGGAACGAGCCATCACCCATCAGGATCTCGTCGCCGGCCATGGCAATCACCGAAGCCA 5828 Query 40990 CCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTGTGCTCGCGCAGCAGGT 41049 |||| || || | |||| |||| | || |||||||||||||||||||||||||||| Sbjct 5829 CCGAGGCGGCCACGCCCAGCACGCGGATGGTCACCTTGGCCTTGTGCTCGCGCAGCAGGT 5888 Query 41050 TGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTGACGTTCACCGTGACTT 41109 ||||||| || | ||| || |||||||||||||| || || |||| ||||||||| || | Sbjct 5889 TGTAGATGGCCATGCCCTCGAAGAAGTCGCCGCCCGGGGAGTTGAGGTTCACCGTCACAT 5948 Query 41110 CGCGCGCGCCGATGTTGCGAAGCGCCGCGCTGATCCGCTTCGCGGTGACGCCGGTGCCCT 41169 | ||||||||||||||||| ||||| |||| ||| ||||| ||||||||||| ||||||| Sbjct 5949 CACGCGCGCCGATGTTGCGCAGCGCGGCGCCGATGCGCTTGGCGGTGACGCCCGTGCCCT 6008 Query 41170 CCCAGTTGTCGCCGATGGAGTCGTAGATCGAAA---TCGCCGCCGCATCGTCGGCGTTCG 41226 ||||||| || ||||||||||||||||| || | ||| |||| ||| ||| || Sbjct 6009 CCCAGTTCTCCCCGATGGAGTCGTAGATGGAGATGCTCGTTTCCGCGTCGCTGGC---CG 6065 Query 41227 CCGCCCGCACATCGGGATTCCAACGCTCCAACGCATCCGGCCGCACGTCGAATTGAGCCG 41286 || ||||| ||||| | ||| || |||| ||||| ||||||| |||||| |||| Sbjct 6066 AGGCTCGCACCTCGGGCTCCCAGCGGTCCACAGCATCGGGCCGCAGATCGAATCCAGCCT 6125 Query 41287 CGCCAAGCCGGTGGTCAGCGCGAATCTCAGGTAGTTGCAGGAGGCTCATCGCCACTCCCC 41346 | |||||||| || ||||| ||||||||||||||| ||||||||| | || | Sbjct 6126 TGGACAGCCGGTGATCCGCGCGGATCTCAGGTAGTTGCTTGAGGCTCATTG---CTTGCT 6182 Query 41347 TTCTGTTTCTGTGTCATCG----GGTTCCGGAGCTGATCGGCGACCGGATCGTCAGCGCG 41402 |||| | ||| | |||| || | || || |||| | ||| ||| || Sbjct 6183 TTCT-TCCCTGAGGGATCGCCCAGGGTGTTGAACT--TCGG-GTTCGG---GTCTGC--- 6232 Query 41403 AGGCAAATCCAGCATCTCGCGGACCTCGTTTTGCTTCATCCAAGGAGACTGTCCGCCGGC 41462 || | || || || |||||||| || | | ||| || || || ||||| Sbjct 6233 CGGGTACTCGGCCAGGTCACGGACCTCATTGGCCGTGTGCCATGGCTGGTGGCCACCGGC 6292 Query 41463 ACCGAGCGCCTTCGAGAAGAAAGCGGCTTGGTCGTTCAGCGTGCCGCGCAACAGCGCGCC 41522 || |||||||| | |||| | | || ||||| || ||||||||||||| |||||||| Sbjct 6293 GCCCAGCGCCTTGGCGAAGTAGTCCGCCTGGTCCTTGAGCGTGCCGCGCAGCAGCGCGCG 6352 Query 41523 CTCGTTGAATTTGAATTGCCGCTGACCCAGCATCTTTTCCGGCAGGAAGGCACGAGCCGC 41582 ||||||||| ||||| | || ||| | | |||| ||| | | || || Sbjct 6353 CTCGTTGAACTTGAAGTAGTAGTGCCCCCTCTCCGCATCCGTCAGCAGCGAGCGCTCCAG 6412 Query 41583 CGCTTGCTCCCACGAAACGAACCAGTGCGAAAGCCCGTACTGAATGAAGAAAATCGCGAG 41642 || |||||||| | ||| | ||| || | | |||| | |||||| || || || Sbjct 6413 GGCCTGCTCCCAGGCCGTGAAGCGCGGCGTAATCGTGAACTGCACGAAGAAGATGGCCAG 6472 Query 41643 CTGTTCGATGCCGCTGCCCCAGCTCGTGTCGTCCATCATCAGAAGGGGACGCGGCACACC 41702 ||| ||||||||| |||||| || ||||| ||||||||||| || || || |||||||| Sbjct 6473 CTGCTCGATGCCGGAGCCCCAACTGGTGTCATCCATCATCAGCAGCGGGCGGGGCACACC 6532 Query 41703 GTACATGCGCGCGACCTCTTCGATCTGGTGATTTCG 41738 ||||| || || ||||| ||||||||||| || || Sbjct 6533 GTACAGACGGGCCACCTCCTCGATCTGGTGGTTGCG 6568 Score = 450 bits (498), Expect = 4e-122 Identities = 847/1232 (69%), Gaps = 45/1232 (4%) Strand=Plus/Plus Query 39221 GCGGCGACCTTCATCGCGCGCATCGGCTCCGGATTCAGCAGGCCGCCGCCGACGCGCTTC 39280 || || |||||||| || |||| ||| || ||| ||| ||||||||| |||||||| Sbjct 4023 GCCGCCACCTTCATTGCACGCAGGCACTCGGGGTTCTGCACGCCGCCGCCCACGCGCTTG 4082 Query 39281 GTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACGCGAACCCCG 39340 |||||||||||||| || || |||||| ||||| || |||||||||||||| || || Sbjct 4083 GTCGTGTAGAACAGCACATAGGGCTTCTTGGTGTAAGGGTCGCGCAGCACGCGCACGCCC 4142 Query 39341 ATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTCGAGTTC 39400 |||||||||| ||||||||| ||| |||||||||||| || |||||| | || Sbjct 4143 ATGCGGTCGACGATCAGATAGCCGCGCTTGAAGTCGCCGAACAGGATCGGCACGGCATTG 4202 Query 39401 GCCGCCACATCCGGCATGTCCGGCACCTCGGTAA--CCGGATAGCCCGCCAGCGTCGCCG 39458 || |||||||| ||||||| | | || | | ||| ||||| | ||||| | Sbjct 4203 GCTGCCACATCGGGCATGTTCTCGTCTTCAGCCAGGCCG--TAGCCGTGGAAAGTCGCGG 4260 Query 39459 GCTGCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCGTCCTTCAGCTTCC 39518 |||| || ||| | ||||||||||| || || || || ||||||||||| ||||| | Sbjct 4261 GCTGACCAGCTTGGGCAGACGGTTGCCACAGGTAATTGCCCTGGCCGTCCTTGAGCTTGC 4320 Query 39519 GCACCTGA-CGCTGCGTGTTGCGGTTCATCGCGAAGCGGGCGTT--GCCCGTGAACGCGC 39575 ||| || || || || | ||| || || || ||||| | | || || Sbjct 4321 GCAGCTTCGCGATG-GTCAGGTTGTTGGTCAGAAAACGCGCGTTCTGGCGGT--ACTTCT 4377 Query 39576 TCGGCAGGTCGTAGACCAGATCGATGATGCCGTCCGACGTGATGTCTGCCGCCGCACCGC 39635 | ||||| | |||| ||| || | | | || || ||||||| || || || |||| Sbjct 4378 TTGGCAGTGCATAGATCAGGTCCAGCGCGGCATCGGAGCTGATGTCGGCTGCAGCGCCGC 4437 Query 39636 TGTTCACGACTTCGATGGCGCCGAACGGGTGCTTCGCGGCATTGGCACCGCCCGCGATGT 39695 |||| ||| | ||| ||||| || || ||||| || |||||||| || || | || || Sbjct 4438 TGTTGGTGACCTTGATCGCGCCAAAGGGATGCTTGGCCGCATTGGCGCCACCGGTGACGT 4497 Query 39696 ACGTAAGCAGCCCGTTCGGCTTGTTCGTGCCGTCGCCAGCGAGGAACGCTTTGCCTTCCT 39755 | || || | ||| ||||| ||| |||||||||| || ||| || |||||||| Sbjct 4498 AGGTCAGGATACCGGCAGGCTTCTTCACGCCGTCGCCACTGATGAAAGCCAGGCCTTCCT 4557 Query 39756 GCTTGGCGAACTCGGTCTGCACTTCGGTCGCGAGCCACGACTCGAGATCGATTTCCGCGT 39815 ||| |||||||| | ||| |||||| | || ||||| | ||||| | ||| || | Sbjct 4558 GCTCCGCGAACTCTGCCTGTACTTCGCTGGCCAGCCATGCCTCGATGTTGATCTCGCTAT 4617 Query 39816 CGTCGAGGATCTGCTGCGTAGCAGCCGGGTTCGCATAGATTTC-----GCCCGATGCGAA 39870 |||| ||||||||||| || ||||||||||| ||||||||||| |||||| || || Sbjct 4618 CGTCCAGGATCTGCTGAGTCGCAGCCGGGTTGGCATAGATTTCACCATGCCCGAAGCCAA 4677 Query 39871 GCTCAGCGGCTGGAACGTAGCCGCGTTGGTCTGCGGACGCTGGCTTGCTTCGCCGACCCA 39930 || | || | | | || || || || | || |||||| | ||||||||||| Sbjct 4678 GCGC--CGCCAGCACCGGAGTGGC---CGTTTCAGGCCGCTGGTCGGTCTCGCCGACCCA 4732 Query 39931 GCCGCTCGTCGTGCCGCCCATATTGAAGAGCTTGGAGAAACCGGCCTTCGAAACCGGCTG 39990 |||| |||||| ||||| ||||| ||||||| |||| ||||| ||||| Sbjct 4733 GCCGGAGCCCGTGCCACCCATGTTGAACAGCTTGGTCCAACCAGCCTTGCTGGTGGGCTG 4792 Query 39991 GACGCGGCAGAGCTGGCGCATCGGCGAAATCAGAACG-AGTTTGTTGGTGATCGTACGAT 40049 || || |||| |||||| |||| | || || || |||| |||||| || |||| Sbjct 4793 CACCTGGGCCAGCTCGCGCATGGGCG-ACTCGTCGCGCAGCTTGTCGGTGATGGTGCGAT 4851 Query 40050 CCCACTCGATCGGCGTCAGGTATCCGCCTTCGCTGTCCTCGCCCTTGTTCAGCGCGGCCT 40109 ||||||||| || |||||||| |||||||| || ||||||||| || |||| Sbjct 4852 CCCACTCGACGGGGGTCAGGTAGCCGCCTTCTTCAGCCGTGCCCTTGTTGAGACTTGCCT 4911 Query 40110 GCACGTCGCC---GCGCTTCACGTGCGCCTTGAATGCTTCCGTGTATTCGGGATCGCGCA 40166 |||||||||| ||| || |||||| | || | | |||| || || |||| Sbjct 4912 GCACGTCGCCCTTGCG---CATGTGCGCATCAAACGAGGCGCTGTACTCCTTGTCTCGCA 4968 Query 40167 GCGGCTTCACGCCGTTCGCGCCCATCTGCGCTGCCGCGATCTTGATGTTGGCCTCGTCGA 40226 | | ||||| |||||||||||| ||||| ||||||||| ||| || || ||| Sbjct 4969 GAG---CAACGCCAGGCGCGCCCATCTGAGCTGCGGCGATCTTGGTGTGCGCGTCTTCGC 5025 Query 40227 CGGCAGCCTGCAGTGCTTCGAGATCAGCGCTGACCTTGTCGACCTTCGCCAACGCGTCGG 40286 || ||| || ||||| | || ||| || | | ||| ||| | |||| Sbjct 5026 TTTCACGCTGAAGCTTGTCGAGCGCTGCATTGATCTGCGCCAGCTTTGCCTCCTGATCGG 5085 Query 40287 ACGTCGGCAGA----CCCGCCTTCACGGCGTCGAGCTGCTTCGTGTGTTCGGCCTTGAAG 40342 | |||| || ||||| | | || | |||||| ||||| || ||| ||| Sbjct 5086 ----CACCAGACTTGCCGGCCTTGATCTCCTCCAACTGCTTGGTGTGCTCTGCCCGGAAA 5141 Query 40343 TCGTGGAACGCCTTCTGCAGATTTTCGATCAGGGCCTTGACCTCGG------TCGGCCCT 40396 | ||||| || |||||| || |||| |||||||| |||| | || | Sbjct 5142 GTGGCGAACGTCTGCTGCAGGCCATCAATCAACGCCTTGACTTCGGCGTTGCTGGGTGCC 5201 Query 40397 TCCGCGCGGACGGAAATGATGCCTCGCGGAAC 40428 || || || ||||| || ||||| || ||||| Sbjct 5202 TCGGCACGAACGGACATAATGCCGCGGGGAAC 5233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143398224013332