Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8974 132 9e-26 seq5384 111 3e-19 seq915 109 1e-18 seq913 109 1e-18 seq912 109 1e-18 seq914 95.1 2e-14 seq10831 89.7 9e-13 seq11243 87.8 3e-12 seq8086 87.8 3e-12 seq7109 87.8 3e-12 seq6207 87.8 3e-12 seq4952 87.8 3e-12 seq7784 86.0 1e-11 seq3532 86.0 1e-11 seq1275 86.0 1e-11 >seq8974 Length=654 Score = 132 bits (146), Expect = 9e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| ||||| | || || ||||| |||||||| |||||||| || ||||| ||| Sbjct 250 CCGGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCC 309 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | | || |||||||| |||||||| ||||| ||||| Sbjct 310 TTCACATTCTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTGAGA 369 Query 68442 GTCTTGACGAATATCTGCATT 68462 |||||||| || ||||||||| Sbjct 370 GTCTTGACAAAGATCTGCATT 390 >seq5384 Length=661 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || ||||| || ||||| |||||||| || ||||| ||| Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||||||||||| | | || |||||||| |||||||| || || ||||| Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 68442 GTCTTGACGAATATCTGCATT 68462 |||||||| || || |||||| Sbjct 385 GTCTTGACAAAGATTTGCATT 405 Score = 109 bits (120), Expect = 1e-18 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| ||| |||||||||||| | | ||| || Sbjct 1 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGCTTCGACC 60 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || ||||| ||||||||||||||||| ||||||||| Sbjct 61 TCGAGGGTGATCGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 108 >seq915 Length=7668 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| ||||| | || || || || ||||| || |||||||| || ||||| ||| Sbjct 3916 CCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCC 3857 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | | || || || | |||||| || ||||| ||||| Sbjct 3856 TTCACATTCTCGATGGTGTCGGAGGCCTCAACCTCAAGGGTGATAGTCTTTCCGGTGAGA 3797 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| Sbjct 3796 GTCTTGACGAAGATTTGCAT 3777 >seq913 Length=4471 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || || || || |||||||||||||| || || ||||| ||| Sbjct 230 CCGGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTAGCC 171 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||||||||| || | | || || |||| ||||| || ||||| ||||| Sbjct 170 TTCACGTTCTCGATGGTATCCGAAGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTGAGT 111 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 110 GTCTTGACGAAGATCTGCAT 91 >seq912 Length=596 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| ||||| | || || || || ||||| || ||||| || || ||||| ||| Sbjct 366 CCGGCGAAAATGAGACGCTGCTGATCAGGGGGAATTCCCTCCTTATCCTGGATCTTAGCC 307 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||| ||||| | | || || || | |||||| || ||||| ||||| Sbjct 306 TTCACGTTCTCGATCGTGTCAGAGGCCTCGACCTCGAGGGTGATCGTCTTTCCGGTGAGT 247 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 246 GTCTTGACGAAGATCTGCAT 227 >seq914 Length=7636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || || | || || ||||| || || || ||||| || || ||||| ||| Sbjct 2659 CCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATTCCCTCCTTATCCTGGATCTTGGCC 2600 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | | || || || | |||||| || || || ||||| Sbjct 2599 TTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATAGTCTTACCAGTGAGA 2540 Query 68442 GTCTTGACGAATATCTGCATTA 68463 |||||||| || || ||||||| Sbjct 2539 GTCTTGACAAAGATTTGCATTA 2518 >seq10831 Length=4251 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||| Sbjct 1636 GCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGA 1695 Query 84514 GCCCCACATCGGGC 84527 ||||| |||||||| Sbjct 1696 GCCCCGCATCGGGC 1709 >seq11243 Length=2799 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 2716 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 2775 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 2776 CCCCGCATCGGGC 2788 >seq8086 Length=7711 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 7708 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 7649 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 7648 CCCCGCATCGGGC 7636 >seq7109 Length=3587 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 3504 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 3563 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 3564 CCCCGCATCGGGC 3576 >seq6207 Length=9077 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 1518 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1577 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 1578 CCCCGCATCGGGC 1590 >seq4952 Length=1793 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 578 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 519 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 518 CCCCGCATCGGGC 506 >seq7784 Length=3719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1706 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1765 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1766 CCCGCATCGGGC 1777 >seq3532 Length=5108 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 300 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 241 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 240 CCCGCATCGGGC 229 >seq1275 Length=2295 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 771 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 830 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 831 CCCGCATCGGGC 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921491333774440