Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq914 104 6e-17 seq913 104 6e-17 seq912 104 6e-17 seq5384 96.9 8e-15 seq915 91.5 3e-13 >seq914 Length=7636 Score = 104 bits (114), Expect = 6e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||||||||| ||| |||||||| || ||||||||||| || || Sbjct 2659 CCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATTCCCTCCTTATCCTGGATCTTGGCC 2600 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || || ||||| ||||| ||||| || || ||| Sbjct 2599 TTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATAGTCTTACCAGTGAGA 2540 Query 288454 GTCTTGACGAATATCTGCATTA 288475 |||||||| || || ||||||| Sbjct 2539 GTCTTGACAAAGATTTGCATTA 2518 >seq913 Length=4471 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| ||| | || || ||||| ||||||||||| || || Sbjct 230 CCGGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTAGCC 171 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||| | || || || || ||||| ||||| ||||| || Sbjct 170 TTCACGTTCTCGATGGTATCCGAAGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTGAGT 111 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 110 GTCTTGACGAAGATCTGCAT 91 >seq912 Length=596 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || |||||||| ||| | || ||||| || ||||||||||| || || Sbjct 366 CCGGCGAAAATGAGACGCTGCTGATCAGGGGGAATTCCCTCCTTATCCTGGATCTTAGCC 307 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | || | || || ||||| ||||||||||| ||||| || Sbjct 306 TTCACGTTCTCGATCGTGTCAGAGGCCTCGACCTCGAGGGTGATCGTCTTTCCGGTGAGT 247 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 246 GTCTTGACGAAGATCTGCAT 227 >seq5384 Length=661 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||||||||| ||| ||||| || || || |||||||| || || Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| || | || | || ||||| | ||||| ||||| ||||| ||| Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 288454 GTCTTGACGAATATCTGCATT 288474 |||||||| || || |||||| Sbjct 385 GTCTTGACAAAGATTTGCATT 405 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | ||| | ||| || Sbjct 1 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGCTTCGACC 60 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||||||||| ||||| || ||||||||||| ||||||||| Sbjct 61 TCGAGGGTGATCGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 108 >seq915 Length=7668 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| |||||||| ||| | || || || || || |||||||| || || Sbjct 3916 CCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCC 3857 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | || || || || ||||| ||||| ||||| ||| Sbjct 3856 TTCACATTCTCGATGGTGTCGGAGGCCTCAACCTCAAGGGTGATAGTCTTTCCGGTGAGA 3797 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 3796 GTCTTGACGAAGATTTGCAT 3777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179482444358606