Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5384 113 4e-20 seq8974 86.0 6e-12 seq914 86.0 6e-12 >seq5384 Length=661 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||||| ||||||||||||||||| ||||||||||||||| ||| || | Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||||| |||||||| ||||||||| | || | || |||||||| ||| Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || ||||| || ||||| Sbjct 385 GTCTTGACAAAGATTTGCAT 404 >seq8974 Length=654 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 |||||||||||||| || ||||||||||||||| ||| || ||| | | |||| | Sbjct 265 CGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATG 324 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 ||||||| ||||||||| | || | || || || || ||||| || ||||| ||| Sbjct 325 GTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATC 384 Query 127109 TGCAT 127113 ||||| Sbjct 385 TGCAT 389 >seq914 Length=7636 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||| ||||||||||||||||| || |||||||| ||| ||| || | Sbjct 2659 CCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATTCCCTCCTTATCCTGGATCTTGGCC 2600 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | |||||| |||| ||| | || || || || ||| Sbjct 2599 TTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATAGTCTTACCAGTGAGA 2540 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || ||||| || ||||| Sbjct 2539 GTCTTGACAAAGATTTGCAT 2520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475433177842480