Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5384 95.1 3e-14 seq914 89.7 1e-12 seq8974 87.8 4e-12 >seq5384 Length=661 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| ||||||||||| || ||| || || || ||||| ||||| | Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| ||||| |||||| | | || || ||||| ||||| ||||| || |||||| Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||| ||||| Sbjct 385 GTCTTGACAAAGATTTG 401 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 200936 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 200995 || |||| | |||||||||||||| |||||| | || ||| ||||||||||| |||||| Sbjct 505 TTCTCTTTTCAGGAAAGCAGTTGGAGGATGGACGCACGTTGTCCGATTACAACATCCAGA 446 Query 200996 AAGAGTCTACTCTTCACCTTGT 201017 | || |||||||||||||| || Sbjct 445 AGGAATCTACTCTTCACCTCGT 424 >seq914 Length=7636 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||||||||| ||||||||||| || ||| ||||| || ||||| ||||| | Sbjct 2659 CCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATTCCCTCCTTATCCTGGATCTTGGCC 2600 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| |||||| | | || || || | ||||| |||||||| |||||| Sbjct 2599 TTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATAGTCTTACCAGTGAGA 2540 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||| ||||| Sbjct 2539 GTCTTGACAAAGATTTG 2523 >seq8974 Length=654 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||| | || || ||||||||| | ||||||||| | || ||| ||||||||||| ||||| Sbjct 190 CTTTTATTTGCAGGAAAGCAGCTCGAAGATGGACGCACGTTGTCCGATTACAACATCCAG 131 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || |||||||| |||||||| || Sbjct 130 AAGGAGTCTACGCTTCACCTGGT 108 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 |||||||| |||||||||||||| || || ||| || || ||||| ||||| | Sbjct 250 CCGGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCC 309 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| |||||| | | || || ||||| ||||| ||||| || |||||| Sbjct 310 TTCACATTCTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTGAGA 369 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||| || || Sbjct 370 GTCTTGACAAAGATCTG 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178749751177259