Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq9459 199 1e-46 >seq9459 Length=5878 Score = 199 bits (220), Expect = 1e-46 Identities = 270/374 (72%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 11979 GATTTTAGATATGTGCTGTGGCAGCCGTATGTTCTGGCGTGACAAACGCGATCCGCGCGC 12038 |||| | ||||||||||| ||| ||| ||||||||| |||| | || | ||||| Sbjct 470 GATTCTTGATATGTGCTGCGGCTCCCGCATGTTCTGGTTCAACAAGCAGGACACCCGCGC 411 Query 12039 GGTGTTTATGGATAACCGCAGCGAACAGCACACACTGTGCGACGGCCGCAGCCTGGTTAT 12098 ||||| | |||| |||| |||| ||||| |||||||||||| ||| | |||||||| Sbjct 410 CGTGTTCACTGATATCCGCGCCGAAGAGCACGAACTGTGCGACGGTCGCCGTCTGGTTAT 351 Query 12099 CTCTCCTGACATCATCGCTGACTTTCGCCAGCTCCCTTTTGCTGATGAGTCGTTTCCTGT 12158 | ||| ||| | || || |||||||| | || || |||||| || ||||| || Sbjct 350 CAGTCCAGACCTGATTGCCGACTTTCGTTCATTGCCGTTCGCTGATTCTTCTTTTCCGGT 291 Query 12159 TGTCGTATTCGACCCTCCACATCTTGAAAGAGCAGGGCCAGAGGGC-TGGATGCGCAAAA 12217 ||| || || ||||| || || || ||| | | ||||||| || |||||| | |||| Sbjct 290 TGTGGTGTTTGACCCGCCGCACCTGGAACGCGT-GGGCCAGTCTGCCTGGATGGGTAAAA 232 Query 12218 AATACGGCGTGTTGAATCCAAAGACATGGCGAGATGATTTGCGTGCTGGATTTGTCGAAG 12277 | ||||| ||||| ||| || ||||| ||||| || || ||||| || | Sbjct 231 AGTACGGGCGATTGAACAAAAAAACGTGGCGTACAGATTTACGCGCCGGATTCAAAGAGG 172 Query 12278 CGTTCCGCGTGCTGCGACCTGATGGCGTGTTGATTTTCAAATGGAACGAAACACAGATTC 12337 ||||| ||| || | || |||||||| | || ||||||||||||||||| ||||| | Sbjct 171 CGTTCATGGTGTTGTGGCCACATGGCGTGCTCATCTTCAAATGGAACGAAACGCAGATCC 112 Query 12338 CTGTCAGCCAGGTT 12351 | || |||||| || Sbjct 111 CGGTAAGCCAGATT 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154910268504384