Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq9459 96.9 1e-15 >seq9459 Length=5878 Score = 96.9 bits (106), Expect = 1e-15 Identities = 177/264 (67%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 5757 CCTCACGCGAACATGCTTGGCTTGTATTACATACCCCTTCTATATATTGCTCATGAAACT 5816 || ||||| || ||||| || ||||||||| | || |||| || || || |||||||| Sbjct 2327 CCACACGCAAATATGCTCGGGTTGTATTACCTGCCAATTCTGTACATAGCCCATGAAACG 2268 Query 5817 GGCTTGGGCTTTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCGGGGTTTTGT 5876 || ||||||| |||| ||||||||| |||||| Sbjct 2267 GGTCTGGGCTTGGAAGGGGCTTCGAAGGGGCTAAAAAGCTCCATTGAAGCGGGATTTTGT 2208 Query 5877 AGCTATGACGAAGCCACGGAGACAGTCTGGGTGCACGAGATGGCACGTTTTCAAGTAGCT 5936 ||||||||||| | ||| |||| || |||||||| || ||||| || ||| || | | Sbjct 2207 AGCTATGACGAGGACACTGAGATGGTTTGGGTGCATGAAATGGCCGCTTATCAGGTTGGT 2148 Query 5937 -GAGTCATTAAAGCCAGCCGATAACCGCTGTAAGAACGTGCAA--AAAGAGTATGATTCA 5993 ||| | | ||||||| |||||||||||| | ||| || || || ||| ||| Sbjct 2147 CGAG-CGCTGAAGCCAGGGGATAACCGCTGT--GCTGGTGTAAGGAATGAATATATGTCA 2091 Query 5994 TTGCCGTCAAGCCCTTATTTATCA 6017 || || || ||||| ||||||| Sbjct 2090 TTACCTGAAAACCCTTTTTTATCA 2067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145023604391724