Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq7475 297 6e-76 >seq7475 Length=18404 Score = 297 bits (328), Expect = 6e-76 Identities = 542/793 (68%), Gaps = 8/793 (1%) Strand=Plus/Minus Query 45433 AACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGA 45492 ||| |||||||| ||| |||| || ||||| | | | || | ||| ||||| | Sbjct 17490 AACCATGAAACAGTATTTAGAACTGATGCAAAAAGTGCTGGATGAAGGCACACAGAAAAA 17431 Query 45493 AGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCA 45552 || || || ||||| || || | || | || || | |||| |||| ||||| |||| Sbjct 17430 CGACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCA 17371 Query 45553 GGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACT 45612 ||| || |||||||| || ||||| ||| | ||| | |||||||||||| |||| || Sbjct 17370 GGAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCT 17311 Query 45613 GCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGAT 45672 ||| |||||||| | ||||| || || ||| ||| |||| || || || | || Sbjct 17310 GCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAAT 17251 Query 45673 TTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 |||||||| ||||| ||||||||||| || | ||||| | || ||| |||||||| Sbjct 17250 CTGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCG 17191 Query 45733 GTCGTGGAAAGGGGCTGACGGGAAAACGG----TCGACCAAATTGCGGCGGTCTTTAAGG 45788 ||||| | | || || ||| | ||||| || | |||| || || Sbjct 17190 CGCGTGGCCTACGCCAGATGG----ACGCCATATTGACCAGATCACCACGGTGTTAAACC 17135 Query 45789 AAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGT 45848 | |||| ||||| |||| || || | | || ||| |||||||| | || Sbjct 17134 AGCTCAAAAATGACCCGGACTCTCGCCGTATCATCGTTTCCGCATGGAACGTCGGCGAGC 17075 Query 45849 TGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCC 45908 ||| ||||| | || | || || ||| ||| ||||||||||| ||| ||||| Sbjct 17074 TGGATAAAATGGCGCTGGCGCCGTGCCATGCGTTCTTCCAGTTTTACGTAGCGGATGGCA 17015 Query 45909 GGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACA 45968 | | || ||| | | |||||||| |||| || || || ||||||||||||| Sbjct 17014 AGCTCTCCTGCCAACTGTATCAGCGTTCGTGCGATGTGTTCCTCGGCTTGCCGTTTAACA 16955 Query 45969 TCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCG 46028 | || ||||| | |||||| || ||| | || || || ||||| || || || || | Sbjct 16954 TTGCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTG 16895 Query 46029 AACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAAC 46088 | | | | ||||| |||||| || |||||| |||||| |||| ||| || | | Sbjct 16894 ATTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATC 16835 Query 46089 TGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGT 46148 ||||||| | || || |||||| ||||||||||||| || |||||||| ||||| | Sbjct 16834 TGCAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAAT 16775 Query 46149 CTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGA 46208 |||| ||||||||| | ||| || || ||| ||| ||||| || ||||| || | | Sbjct 16774 CTATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTA 16715 Query 46209 TTAAGGCTCCTGT 46221 |||| || || || Sbjct 16714 TTAAAGCGCCAGT 16702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157729087625178