Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq9459 695 0.0 >seq9459 Length=5878 Score = 695 bits (770), Expect = 0.0 Identities = 644/815 (79%), Gaps = 6/815 (1%) Strand=Plus/Minus Query 36529 AGAGATGTGAACCACATTTCTGCGCCGGACAAAACCATTCCTACCGGATTCAGGGGGTAA 36588 || ||| |||| | |||||| ||| || ||| | ||||| ||||||||||||||||| Sbjct 1625 AGGGATCCGAACAAAATTTCTCAGCCCGATAAAGCGATTCCGACCGGATTCAGGGGGTAG 1566 Query 36589 CGATGAAAAACGTAATCGGTACTGGCAGTGCGCTTGATCGCCTGAAAAGAATTATCCCAG 36648 ||||||||||| | | ||||| || ||||||||||| |||||||||| | | || ||| Sbjct 1565 CGATGAAAAACATGGTTGGTACAGGAAGTGCGCTTGAGCGCCTGAAAAAACTCATTCCAC 1506 Query 36649 CCAGTGTGCAGCCGAAATTCTCGACTGCTGATGAGTGGCGGACATGGCA---GGAAGCCG 36705 | | || |||||||| ||| | | || | ||| || | | ||||| ||||| Sbjct 1505 CAGGCGTTCAGCCGAAGTTCACCAGCGCAGCAGAGCTGCTGGCGTGGCAACGGGAAG--- 1449 Query 36706 AAGGGCGTAAACGCAGTGAAGAGCTTGACAGGATGAATCAGAAATCCCGCACCGAGAAGA 36765 |||| | || || ||||||| || |||||| |||| |||||| |||| || ||||| | Sbjct 1448 AAGGCCTGAAGCGGTGTGAAGAACTGGACAGGCTGAACCAGAAAGCCCGGACAGAGAAAA 1389 Query 36766 TTTTCGGACGTTCCGGAATTCAGGATTTACACCGCGGTTGCACGTTCGCCAATTACGAAG 36825 | || || || || ||||| || |||| ||| | || |||||||| |||||| | | Sbjct 1388 TCTTTGGCCGCTCAGGAATCCAAAGCCTACATCGCAGCTGTACGTTCGCGAATTACCAGG 1329 Query 36826 TTAACGGTGATGGCCAGCGTAAGGCTTTCACGATGGCTAAGAGCTATGCGCAGAACTTTG 36885 | || || || ||||| || || ||||||||||| |||||||| || ||||| || | Sbjct 1328 TATCTGGGGAAGGGCAGCGCAAAGCCTTCACGATGGCAAAGAGCTACGCACAGAATTTCG 1269 Query 36886 GCGCCGGATTTGCGAGCTTTGTGTTCAGCGGTGGTCCGGGAACCGGGAAAAACCATCTTG 36945 | || || || |||||||| ||||| |||||||| || || ||||||||||||||||| | Sbjct 1268 GTGCTGGGTTCGCGAGCTTCGTGTTTAGCGGTGGCCCTGGTACCGGGAAAAACCATCTCG 1209 Query 36946 CGGCGGCAATCGGAAATCATCTGCTGGCCGGCGGTCATAGTGTTCTGGTGGTAACCATTC 37005 | || ||||||||||||||| |||| | ||||| ||||| || ||||| || || || | Sbjct 1208 CTGCAGCAATCGGAAATCATTTGCTTTCTGGCGGGCATAGCGTGCTGGTCGTCACTATCC 1149 Query 37006 CTGACCTGATGCTCAGGGTTCGTGAGTGCTACGACGGTGGGCAATCAGAAGCGTCCCTGC 37065 ||||||||||||| | ||||| |||||||||||||||||||| ||||| || || || | Sbjct 1148 CTGACCTGATGCTACGCGTTCGCGAGTGCTACGACGGTGGGCAGTCAGAGGCTTCGCTTC 1089 Query 37066 TTGATGACCTTTGCAAAGTTGACCTGCTGGTACTGGATGAAGTCGGTATTCAGCGTGGGA 37125 | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct 1088 TGGATGACCTCTGCAAAGTTGATCTGCTGGTACTGGATGAAGTCGGTATTCAGCGCGGTA 1029 Query 37126 GCAGTGGTGAGAAGGTCATTCTCAATCAGGTTATCGATCGCCGTCTCTCATCGATGCGAC 37185 ||| || ||||| |||||||| |||||||||||||| || || || || |||||||| | Sbjct 1028 GCAACGGCGAGAAAGTCATTCTGAATCAGGTTATCGACCGTCGCCTGTCGTCGATGCGTC 969 Query 37186 CTGTTGGCGTTCTGACGAATCTTAACCACGAGGGGCTGTTGGATTCACTGGGCGCGAGGG 37245 | || || | |||||||| || |||||||| | || | | | |||||||| ||| Sbjct 968 CGGTGGGGATCCTGACGAACCTGAACCACGAAGAACTTCTCGGAGCGTTGGGCGCGCGGG 909 Query 37246 TTATCGATCGCCTCCAGATGGACGGAGGGATGTGGGTGAATTTTGACTGGGGAAGCTACC 37305 |||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||| Sbjct 908 TTATCGATCGCCTCCAGATGGATGGCGGGATGTGGGTGAACTTTGACTGGGGCAGCTACC 849 Query 37306 GGAAAAACGTTAGCCACCTCCGGATTGTGAAATAA 37340 | || ||||||||||| |||||||| || |||||| Sbjct 848 GCAAGAACGTTAGCCATCTCCGGATCGTTAAATAA 814 Score = 132 bits (146), Expect = 1e-26 Identities = 101/117 (86%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 34132 TTTGCC-TTATCGCC-GGCCAGCGGAACGTTTATCACCTGCTGCGCGTTAACCTTGCCAT 34189 |||||| || ||||| ||| ||||||||||| |||| ||||||||||| || ||| Sbjct 5411 TTTGCCCTTGTCGCCAGGCTGGCGGAACGTTTCAAACCTACTGCGCGTTAATCTCACCAC 5352 Query 34190 CTCATCCCGGTCTTCGTATGCCCCGGGCGGCTACTTCGTGGGCGTCCTGCCTTGATG 34246 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 5351 CTCATTCCGGTCTTCGTATGCCCCGGACGGCTACTTCGTGGGCGTCCTGCCTTGGTG 5295 Score = 96.9 bits (106), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 33875 TCGTATTCAGCGCACTGCCTGGAACAATATTCCTTTTCTTTGCGCGCCAGTTGCGAGCCG 33934 ||||| |||||| || |||||||||| || || |||||||||||||| || |||||| Sbjct 5878 TCGTAAGAAGCGCAGCGCTTGGAACAATACTCTTTCTCTTTGCGCGCCAGCTGTGAGCCG 5819 Query 33935 TTGCGATAGAGAAGTGTGTTTT---TTACTTCTT 33965 |||||||||||||| ||| ||| ||||||||| Sbjct 5818 TTGCGATAGAGAAGGGTGCTTTTGATTACTTCTT 5785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151393943630658