Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq9459 1278 0.0 seq2856 273 6e-69 seq4798 262 1e-65 >seq9459 Length=5878 Score = 1278 bits (1416), Expect = 0.0 Identities = 897/1005 (89%), Gaps = 22/1005 (2%) Strand=Plus/Minus Query 29432 TCGTGCGAAGCGCAACGTTTGGAGCAATACTCTTTTTCTTTGCGCGCCAGCTGTGAGCCG 29491 |||| |||||||| || ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 5878 TCGTAAGAAGCGCAGCGCTTGGAACAATACTCTTTCTCTTTGCGCGCCAGCTGTGAGCCG 5819 Query 29492 TTGCGATAGAGAAGGGTGCTCTTGATTACTTCCTCCGTTTTAACCGGCTTGCCGCAATAT 29551 |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct 5818 TTGCGATAGAGAAGGGTGCTTTTGATTACTTCTTCCGGTTTAACCGGCTTGCCGCAATAT 5759 Query 29552 CCGCATTTCTTGTCTAACATGACATCCTCCGCTAGTGGCTGAGTCCATGCCCCAGACCGT 29611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5758 CCGCATTTCTTGTCTAACATGACATCCTCCGCTAGTGGCTGAGTCCATGCCCCAGACCGT 5699 Query 29612 TCAGATAAACTTCAACCAGCAAATCCTTGGTGTAAGTCATTTCTACGCCGCGATGCAGAT 29671 |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 5698 TCAGATAAACTTCAACCAGCAAATCCTTGGTGTAAGTCATCTCCACGCCGCGGTGCAGAT 5639 Query 29672 ACAAACGTCCGCGAGCGTTAGCTGATGCCGTCCAGGTTGAGTCTTTGTGTTTGACGAGCA 29731 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5638 ACAAACGTCCGCGAGCGTTAGCTGAAGCCGTCCAGGTTGAGTCTTTGTGTTTGACGAGCA 5579 Query 29732 TCCCCGGCTGAACTGCGCCGCGGTTTACTGTCTGTGTACCGTAGTGCTGATGAACCATGA 29791 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 5578 TCCCCGGCTGAACTGCGCCGCGGTTTACCGTCTGTGTACCGTAGTGCTGATGAACCATGA 5519 Query 29792 TGTTCTCCAG-TTTTCTGAGTGAACTTCGCTGGTGGTGCCGTGACGCTGATCTTCACGGT 29850 |||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 5518 TGTTCTCCAGTTTTTCTGAGTGAACTTCGCTGGTGGTGCCGCGGCGCTGATCTTCACGGT 5459 Query 29851 TGAGCTTTTTCACTCTGCAATTCACCACCGCGAAGCTCACTTCTGTG-TTTGCCCTTGTC 29909 ||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 5458 TGAGCGTTTTAACTCTGCAATTCACCACCGCGAAGCTCAC-TCTGTGCTTTGCCCTTGTC 5400 Query 29910 GCCAGGCTGGCGGAACGTTTCAAACCTACTGCGCGTTAATCTCACCACCTCATTCCGGTT 29969 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5399 GCCAGGCTGGCGGAACGTTTCAAACCTACTGCGCGTTAATCTCACCACCTCATTCCGGTC 5340 Query 29970 TTCGTATGCCCCGGACGGCTACTTCGTGGGCGTCCTGCCTCGGTGGTTGTGTTGATGGAG 30029 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5339 TTCGTATGCCCCGGACGGCTACTTCGTGGGCGTCCTGCCTTGGTGGTTGTGTTGATGGAG 5280 Query 30030 TAAGTAAA-ACACCGCTTTACCATTAAGTCAA-GCAATGCAGATGCAAAAGGTAAAGCAT 30087 ||| |||| ||| | |||| ||||| |||| || | |||| | Sbjct 5279 TAATTAAACACAATG-TTTATTTGCGTGTCAACATAATG-AGTGTTTTTATATAAACAAA 5222 Query 30088 AGCTGTATGTTGG--GCGAAATTTATCCAGATTAGAGATGATTGCATCAACTAAAAGTGT 30145 | | || |||| ||| | || || || ||| ||| || | ||| ||| Sbjct 5221 AAGTTTA-ATTGGTTGCGCAGGTTGTCACGAGTAG-TATG-TTTTGTGGTCTATTTGTGG 5165 Query 30146 GTATGATGaaaaaaaaCATCATTGGGGGTGGGATGTGGAAAAGTTCTACGTGGGTTACAA 30205 ||| |||||| || || ||| | ||| |||||||||| |||||||||||||| Sbjct 5164 TTAT-------AAAAACCTCGATGAGGG-GCGATATGGAAAAGTTTTACGTGGGTTACAA 5113 Query 30206 CGATGTATGTCAGGCGGTAGGTAGAGCGACGCTGAATCTGATATCACATGGAGACGCGCC 30265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5112 CGATGTATGTCAGGCGGTAGGTAGAGCGACGCTGAATCTGATATCACATGGAGACGCGCC 5053 Query 30266 AACTACTGAGGCGATCATTTCAATACTTGAGTCGCTGGGGGATATTGAGCAGAACGATTT 30325 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 5052 AACTACTGAGGCGATCATTTCAATGCTGGAGTCGCTGGGGGATATTGAGCAGAACGATTT 4993 Query 30326 TTGGCGACAGGTGTTCAGGTTTGCAGCTGAGGAAGTGCGAAAAGGGTAGGCAAAAG-AAA 30384 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 4992 TTGGCGACAGGTGTTCAGGTTTGCAGCTGAGGAAGTGCGAAAAAGGTAGGCAAAAGAAAA 4933 Query 30385 CCCGGCGCGGTGGCCGGGTCGATTCTACCCAAATGGTAGCTCAAT 30429 |||| |||||||||||||| ||| || | ||||| || || || Sbjct 4932 CCCGACGCGGTGGCCGGGTATATT-TATTCGAATGGGAGATCTAT 4889 Score = 984 bits (1090), Expect = 0.0 Identities = 652/720 (91%), Gaps = 5/720 (1%) Strand=Plus/Minus Query 33187 TACGGGAGTCACCCCGCATGAGTTGCGGCCTGACTTATATCCCAATCCAACCGATGCCTT 33246 ||| || || || || |||||||| || ||||| || || | ||| || || |||| || Sbjct 3214 TACAGGGGTAACTCCACATGAGTTACGTCCTGATTTGTACCTCAACCCTACGGATGGATT 3155 Query 33247 ACCAGTGCAAGAAACGAGGGCATAACCATGCAGTCACTGTCACTTCATCAAAATAGCGGA 33306 ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3154 ACCAGCTCAGGAAGCGAGGGCATAACCATGCAGTCACTGTCACTTCATCAAAATAGCGGA 3095 Query 33307 TATCAACCGGCTGCGATGATAAATCGCAATCAACCTGTCTCGGTAGATAAACATGACCAG 33366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3094 TATCAACCGGCTGCGATGATAAATCGCAATCAACCTGTCTCGGTAGATAAACATGACCAG 3035 Query 33367 ATCCGCGATGCCGTTCGTGCGTGGGCGGGTGTAGATGGTCAGGATGTCGTTTCTGCTCTG 33426 |||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||| Sbjct 3034 ATCCGCGATGCCGTTCGTGCGTGGGCGGGTGTAGATGGTCAGGACGTAGTTACGGCTCTG 2975 Query 33427 ATCATCGAAGAGTACCAGGCTCAAGGGGGAGACGAGATCACTTTCCCTGATGACCTCAGC 33486 |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 2974 ATCATCGAAGAGTACCAGGCGCAAGGGGGAGACGAGGTCACTTTCCCTGATGACCTCAGC 2915 Query 33487 CGACAGCGTCAGAAGCTTTTCCGCTTTCTGGATAACCATTTCAACAGCGAACGGTACCGC 33546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2914 CGACAGCGTCAGAAGCTTTTCCGCTTTCTGGATAACCATTTCAACAGCGAACGGTACCGC 2855 Query 33547 GAAAACGTTCGCCAGCTGACTCCGGCAATCCTCGCTGTCCTGCCGATTGAATACCGCAAT 33606 ||||||||||||||||||||||||||||| || |||||||| || | || | ||||||| Sbjct 2854 GAAAACGTTCGCCAGCTGACTCCGGCAATTCTTGCTGTCCTTCCACTCGAGTTCCGCAAT 2795 Query 33607 CGTCTGCTACCAGAAGACAACGTAATGGCTCGTCTGGCAAGGCTGGAGAAGGAAACCAGC 33666 || |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct 2794 CGCCTGCTACCCGAAGACAACGTAATGGCCCGTCTGGCTCGGCTGGAGAAAGAAACCAGC 2735 Query 33667 GAAGCGAAGATTGCTGTCGCAATGGATGCGCCACGTCATCAGAAGCTGAAAGAGTTGAGC 33726 |||||||||||||| ||||| ||| |||||||||| |||||||||||||| ||| ||||| Sbjct 2734 GAAGCGAAGATTGCCGTCGCGATGAATGCGCCACGCCATCAGAAGCTGAAGGAGCTGAGC 2675 Query 33727 GAGGGGATCGTGGAGATGTATCGCGTTGACCCTGGGTTAACCGGTCCGTTGATGGAAATG 33786 |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| ||| Sbjct 2674 GAGGGGATTGTGGAAATGTACCGCGTTGACCCTGGGTTAACCGGTCCACTGATGGAGATG 2615 Query 33787 GTGCAGATTATGCTGGGGGCTATATGACCGGTTCAAAAATGGCGAAAGCCGCGGTGCTCG 33846 |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2614 GTGCAGATGATGCTGGGGGCTATATGACCGGTTCAAAAATGGCGAAAGCCGTGGTGCGCG 2555 Query 33847 AACACCAACGGCTTTCAGGTGCAAAAACAGTGCGTA---ATTGCGGAGAACAGTATGTCA 33903 |||||||||||| ||||||||| || | |||||| ||||| ||| | | ||||||| Sbjct 2554 AACACCAACGGCCTTCAGGTGC-AATTCGTTGCGTACTCATTGC-GAGGAAATTATGTCA 2497 Score = 178 bits (196), Expect = 4e-40 Identities = 290/408 (71%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 32154 TTACTCAGAATCACCCTTAATCCGCCGCCCCATATACTTGGCGTACAGTTCATCGAGTTC 32213 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3862 TTACTCGGCATCACCTTTAATCCGCCGCCCCATATACTTGGCGTACAGTTCATCGAGTTC 3803 Query 32214 CTTCAGGCGCAGTGATACCG-CCTTAAGAACTCCACTCTGATCCTCTTCG---GGGAGTT 32269 |||| || || ||||| || || | | | | || || |||||| || |||| Sbjct 3802 TTTCAATCGTAGAGATACGATCCGCAACATGTTCTGT-TGTTCTTCTTCGTTTGGTAGTT 3744 Query 32270 GACGGAAAAAACGTAAAAGCTCTT-GCTCATTACTTTTTAATCCATCATTGGGCCCTATA 32328 || | | || || ||| | || | | | || || || || | | | Sbjct 3743 GATTATAGAGTTCCAATAG-TCTCCGTTCGTCGTGTCTCAAACCGTCCTTAGCGTCCACG 3685 Query 32329 TCCTGCCCCAAAACCCAGGCTAAATTCACACCAAGCGCATCAGCTAGCTTAAGTGCGGAG 32388 ||||| || | |||||| | | | | || || |||||||| || || || | ||| ||| Sbjct 3684 TCCTGACCTAGAACCCACTCAAGACTTACGCCTAGCGCATCGGCAAGTTTTATTGCTGAG 3625 Query 32389 TTTTTTCCAATAGTTCCCCTTACAAACCAGTTGTTAACCGACTGGGATGTTACGCCACAA 32448 ||||||| || | ||| || |||||||||||||| || || || | | || ||||| Sbjct 3624 CTTTTTCCTATCGCTCCTCTGACAAACCAGTTGTTGACTGATTGTGCGCTCACACCACAG 3565 Query 32449 ATTCTGGCCAGATCTGCTTTTGAGAGATGTTTACTATTCG-TGATCTCATTGAGTCGTCT 32507 ||||| || | ||| ||||| || | | || || ||| |||| ||||| | || | Sbjct 3564 ATTCTCGCTATATCCGCTTTGGATATGCGCTT-CTTCTCGATGATTTCATTTAAACGCCG 3506 Query 32508 GACCTGTGGGTTATCTGATTCGTGTGTATTTTTTCTCATGTA-CAAGA 32554 ||||| |||||||||| || |||||| ||||||||||| || ||||| Sbjct 3505 AACCTGCGGGTTATCTGTTTGGTGTGTGTTTTTTCTCATATATCAAGA 3458 >seq2856 Length=3896 Score = 273 bits (302), Expect = 6e-69 Identities = 247/311 (79%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 22135 CACGCAGTTAAAGTGACGGGCATACTCTTCAAGGCTGGTGATCCCCAACCGCACCCATTT 22194 ||| ||||||||||| |||||||||||||||||| | | |||||||| ||||||||||| Sbjct 282 CACACAGTTAAAGTGGCGGGCATACTCTTCAAGGTTTGAGATCCCCAGACGCACCCATTT 341 Query 22195 AGGATGCGACCATTGCGGCAGACCGATGTAAATCATAACGCGTGAAGGATCTCTTCCACG 22254 |||||||||||| || || | |||||| ||||||||| ||| || |||||||| |||||| Sbjct 342 AGGATGCGACCACTGGGGTAAACCGATATAAATCATAGCGCTTGCAGGATCTCGTCCACG 401 Query 22255 CTACGCACACGGGCGATGCGCGGGTAGATATGATTAATGCTGTTATTGTGTTGCTCGGCG 22314 || || || || ||||| |||||| | ||||| | |||||| |||||| |||||| Sbjct 402 CTGCGTACGCGTGCGATACGCGGGAAAATATGCGTCATGCTGCCCCGGTGTTGATCGGCG 461 Query 22315 CTGGCGGCACTACAGGCGTCTTCGGCAATCACCAGATTAAAGCCAAGTTCCCAGGCATTG 22374 |||||||| |||||||||||||| |||| | ||||||||| || | ||||| ||||| Sbjct 462 CTGGCGGCGCTACAGGCGTCTTCTGCAACAATCAGATTAAAACCCAACTCCCACGCATTT 521 Query 22375 CGGGCGGTGGATTCAACACCGATATTGGTCGAGATCCCACATAACACAATTGTATCGATA 22434 || || || || || || || || || || ||||| || || || || || ||||| || Sbjct 522 CGCGCCGTCGACTCTACGCCAATGTTTGTGGAGATGCCGCACAAGACGATAGTATCAATG 581 Query 22435 CCTCGGCGGCG 22445 || || || || Sbjct 582 CCCCGACGACG 592 >seq4798 Length=3577 Score = 262 bits (290), Expect = 1e-65 Identities = 167/179 (93%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 41391 CGGGGCTTTTTTATTTCAGGCTTCCGGGAATCATCCGCTACGTGCTTTGTTGATAAATCC 41450 ||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 177 CGGGGATTTTTCATTTCAGGCTCACGGGAATCATGCGCTACGTGCTTTGTTGATAAATCC 118 Query 41451 AGCCCGTGAAGCCTGACCCTTTTCATACACACACAGCGCCATCCGAAGAATCGGAGGTGA 41510 |||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||| Sbjct 117 AGCCCGTGCAGCCTGACCCTTA-CAT-CACACACAGCGCCATCCGAACTATCGGAGGTGA 60 Query 41511 GGCTATGACCAGAATGAGCACCATTTACAGCAGACTTTCATATGGAACAGGCACCACGC 41569 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 59 GGCTATGACCAGAATGAGCACCATTTACAGCAGACTTTCATATGGAACAGGAACCACGC 1 Score = 109 bits (120), Expect = 2e-19 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 39303 CCTCCGCGTTCGCTGGCAGCGGCTTCGCTTATACCACTTTCCCGGCTCTGTGCTAACGGA 39362 |||||||||||| ||||| || | ||||||||||||||||| ||||||||||| ||||| Sbjct 1372 CCTCCGCGTTCGTTGGCAACGATTGCGCTTATACCACTTTCCGGGCTCTGTGCTGACGGA 1313 Query 39363 CTACCGGATACTGAAGAATTACGTGAAAAC 39392 ||||| ||||||||||| ||| | ||||| Sbjct 1312 TTACCGAATACTGAAGAACTACATCAAAAC 1283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141859231962138