Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq9459 343 4e-90 seq4798 264 3e-66 >seq9459 Length=5878 Score = 343 bits (380), Expect = 4e-90 Identities = 306/386 (79%), Gaps = 19/386 (5%) Strand=Plus/Minus Query 29779 TCGTATTCAGCGCATTGCTTAGAGCAATATTCTTTTTCTTTCTGTGCCAGTTGCGAACCG 29838 ||||| |||||| |||| || ||||| ||||| ||||| | ||||| || || ||| Sbjct 5878 TCGTAAGAAGCGCAGCGCTTGGAACAATACTCTTTCTCTTTGCGCGCCAGCTGTGAGCCG 5819 Query 29839 TTGAGATAGAGCAAGGTGCTCTTTACTTCTGCGCCTTCTTCAACAGGCTTGTGGCAATAA 29898 ||| ||||||| | |||||| || | | || | | || ||| |||||| |||||| Sbjct 5818 TTGCGATAGAGAAGGGTGCTTTTGATTACTTCTTCCGGTTTAACCGGCTTGCCGCAATAT 5759 Query 29899 CCACATTCTTTTTTCATCACCTGTCCTTAAAGTGTTTTGGCAACTCTCCGTTAATGGCTG 29958 || |||| || | | || || || | ||||| || |||||| Sbjct 5758 CCGCATTTCTTGTCTAACA------------------TGACATC-CTCCGCTAGTGGCTG 5718 Query 29959 AGGCCATTCCCCAGACCGTTCAGATAAACTTCAACCAGCAAATCCCTGGTGTAAGTCATC 30018 || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 5717 AGTCCATGCCCCAGACCGTTCAGATAAACTTCAACCAGCAAATCCTTGGTGTAAGTCATC 5658 Query 30019 TCAACGCCGCGATGCAGATACAAACGACCACGAGCATTAGCTGATGCCGTCCAGGTTGAA 30078 || |||||||| |||||||||||||| || ||||| |||||||| |||||||||||||| Sbjct 5657 TCCACGCCGCGGTGCAGATACAAACGTCCGCGAGCGTTAGCTGAAGCCGTCCAGGTTGAG 5598 Query 30079 TCCTTGTGTTTGACGAGCATCCCCGGCTGAACTGCGCCGCGGTTTACTGTCTGTGTACCG 30138 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5597 TCTTTGTGTTTGACGAGCATCCCCGGCTGAACTGCGCCGCGGTTTACCGTCTGTGTACCG 5538 Query 30139 TAGTGCTGGTTTACCATGATTTCCTC 30164 |||||||| | |||||||| | ||| Sbjct 5537 TAGTGCTGATGAACCATGATGTTCTC 5512 >seq4798 Length=3577 Score = 264 bits (292), Expect = 3e-66 Identities = 164/173 (95%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 43547 tttttCATTTCAGGCTCACGGGAATCATCCGCTACGTGCTTTGTTGATAAATCCAGCCCG 43606 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 171 TTTTTCATTTCAGGCTCACGGGAATCATGCGCTACGTGCTTTGTTGATAAATCCAGCCCG 112 Query 43607 TGAAGCCTGAGCCTTTTCATACACGCACAGCGCCATCCGAAAAATCGGAGGTGAGGCTAT 43666 || ||||||| |||| ||| ||| |||||||||||||||| ||||||||||||||||| Sbjct 111 TGCAGCCTGACCCTTA-CAT-CACACACAGCGCCATCCGAACTATCGGAGGTGAGGCTAT 54 Query 43667 GACCAGAATGAGCACCATTTACAGCAGACTTTCATATGGAACAGGAACCACGC 43719 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 GACCAGAATGAGCACCATTTACAGCAGACTTTCATATGGAACAGGAACCACGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145030003527072