Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq7475 154 2e-32 seq10024 84.2 3e-11 >seq7475 Length=18404 Score = 154 bits (170), Expect = 2e-32 Identities = 183/248 (74%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || || || || || | || || || ||||| ||| | ||||| Sbjct 17429 GACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAG 17370 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 |||| ||||||||||| ||||| ||| || | ||||| ||||| |||||||| Sbjct 17369 GAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCTG 17310 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 |||||||| | |||||| |||||| | || ||| | || ||||||||| ||| Sbjct 17309 CTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAATC 17250 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659 ||||| |||||||| |||||| | |||||| | |||||||| || || || |||||||| Sbjct 17249 TGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCGC 17190 Query 122660 GAGTGGCC 122667 | |||||| Sbjct 17189 GCGTGGCC 17182 Score = 138 bits (152), Expect = 2e-27 Identities = 221/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCA-GTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGC 123132 ||||| || ||||||||||| |||| || ||||||| ||| | |||||||||||||| Sbjct 17009 TCCTGCCAACTGTATCAGCGTTCGTGC-GATGTGTTCCTCGGCTTGCCGTTTAACATTGC 16951 Query 123133 CTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTT 123192 | ||| | || || | |||||| | || |||||| | || ||| ||| ||||| || Sbjct 16950 CAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGATTT 16891 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCA 123252 || ||||| ||||| || ||| |||||| ||| || |||| || | || |||| Sbjct 16890 TGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATCTGCA 16831 Query 123253 GTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTAT 123312 | | | || ||||| | || | || | ||| || |||||| || || ||||| Sbjct 16830 GCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAATCTAT 16771 Query 123313 CTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTAA 123372 || |||||| || ||||| |||||| | | || ||||| ||||| | |||||| Sbjct 16770 TTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTATTAA 16711 Query 123373 GGCACCGGTGGCGAT 123387 || || ||||| || Sbjct 16710 AGCGCCAGTGGCTAT 16696 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 122789 ATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTATC 122848 || ||||| |||| || ||| | | || || ||||| ||||||||| ||||||||| Sbjct 17162 ATTGACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGTATC 17103 Query 122849 ATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATGCC 122908 ||||| || |||||||| | || |||||| |||||||| | || || |||||||| Sbjct 17102 ATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATGCG 17043 Query 122909 TTCTTCCAGTTCTAC 122923 ||||||||||| ||| Sbjct 17042 TTCTTCCAGTTTTAC 17028 >seq10024 Length=4015 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||| || ||| |||| |||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 64 TGTGGCGCAGCTGGT-TAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCC 6 Query 169792 GTC 169794 ||| Sbjct 5 GTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777521411009200