Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq4798 168 2e-37 >seq4798 Length=3577 Score = 168 bits (186), Expect = 2e-37 Identities = 297/427 (70%), Gaps = 13/427 (3%) Strand=Plus/Minus Query 28892 GGTGCGTAAAACTCATAATTGCTCAGGTCACCGCGCTGAATCAGCTCAGCGATGGTGGTC 28951 || |||||||| || || |||||||| | || | ||||| || || || || Sbjct 3546 GGCGCGTAAAATTCGTATTTGCTCAGTGCGCCAATCGCGATCAGTTCCTTCATCGTTGTT 3487 Query 28952 GGTTTGATGAGTCGGTCATAGTATTTACCCAAGAACGGGGAGAACGGGGTACCCGACAGA 29011 || || || || || | |||||| || || | |||| || ||| || ||||| || ||| Sbjct 3486 GGCTTAATCAGGCGCTGATAGTAATTGCCTAGGAACTTGGCGAAAGGCGTACCGGAAAGA 3427 Query 29012 CCAATGACTTTCACGCCTTTA----GCGCG-CAGGCGATCAATGTCCTGCAGGATGCGtt 29066 || | || ||| | ||| ||| | |||| || || ||| ||| | || || Sbjct 3426 CCGACCACCTTC--GTTTTTGTGTTGCGGGTCAGGTTGTCGATAACCTCCAGCA-GCTTT 3370 Query 29067 tt---tttCGGAGGTGCGCTTCGTCGATGATCAGGAGATCGATGTTGTCTGGGAAGACGC 29123 || |||| ||||| |||||||| | |||||| || ||||||||||| ||||| | | Sbjct 3369 TTGCGTTTC--AGGTGGGCTTCGTCAACGATCAGCAGGTCGATGTTGTCCGGGAATTCAC 3312 Query 29124 GGCGAATGAGTGTATCGGCGCTGGCAATTTGAATTTTCCGAGCCGGATCGTAGTTGGGAT 29183 |||||||||| ||||||||||||||||| ||||| | | ||| | || || | Sbjct 3311 GGCGAATGAGCGTATCGGCGCTGGCAATCTGAATAAGCGCTGTCGGGTTATATGACGGGT 3252 Query 29184 GATCGGCCCAGATATAACTAATCTCATCACCGGGCAACCCATATTCAACAAAACGATTCG 29243 |||| ||||| |||||| ||||| || || || | |||||||| | || || | | Sbjct 3251 GATCACGCCAGACATAACTGATCTCTTCGCCAGGAAGACCATATTCCATGAATCGGGTGG 3192 Query 29244 CTGTCTGGCCAATCAGAATGGTATATGGCGCACAAAAGAGTACACGCATACCACGGCTGA 29303 |||||||| ||| ||| | ||||| || || ||| | ||| ||||| | ||||||| Sbjct 3191 CTGTCTGGTCAAGCAGTACCGTATACGGAGCCACAAACATTACGCGCATTTCGCGGCTGA 3132 Query 29304 CGAACCC 29310 | || || Sbjct 3131 CAAAGCC 3125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124699950526476