Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq6761 109 5e-19 >seq6761 Length=4567 Score = 109 bits (120), Expect = 5e-19 Identities = 499/778 (64%), Gaps = 19/778 (2%) Strand=Plus/Minus Query 38636 GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGAAT 38695 || |||||||||| || || || || || || |||| ||||| | |||||||| || Sbjct 4266 GCGATTTCTTCCAGACAGGCTATTTTAAAGCCCTGACGTTTCTCCACCGTCTGCACAAAC 4207 Query 38696 TGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCG 38755 | ||||| |||| |||| | || || || || || ||||| | ||| || || || Sbjct 4206 GTGCTCGCTTCGATCAAACTGTCATGCGTACCGGTATCCAGCCAGGCAAAGCCACGCCCA 4147 Query 38756 AGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCTCC 38815 || | ||| || | | | ||| || || || | | |||||| || |||||| Sbjct 4146 AGCAATTCGACCGTCAGATGTCCGTCATCAAGATACATTTGGTTGATAGACGTAATCTCC 4087 Query 38816 AGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCATAG 38875 ||||| |||||| | ||||| | || | ||| || | || | | |||||| Sbjct 4086 AGTTCCCCACGCTCAGAAGGTTTCACGCGTTTTGCGTATTCCACCACTTTGCTGTCATAG 4027 Query 38876 AAATACAAACCTGTGACAGCATAATCTGATTTAGG-ATTTTCAGGTTTCTCTTCAATAGA 38934 ||||| | || || || || | | || || || | |||| || |||||||| | ||| Sbjct 4026 AAATAGAGCCCGGTCACCGCCCAGTTGGACTTTGGTACTTTC-GGCTTCTCTTCCAGAGA 3968 Query 38935 AATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCAA 38994 | || || ||| |||| ||||||||||| ||||| ||||| || | ||| Sbjct 3967 GACTGCGCGAAAATTGTCATCAAACTCAACCACACCAAATCGCTCAGGGTCCATTACCTG 3908 Query 38995 ATACCCGAAAATACAAGCTCCGCCCCAAAC-ATCTACCATCTCACTGGCGTTAATCAGTA 39053 ||| || ||| || | ||| || | ||| || | | | | | |||| Sbjct 3907 ATAACC--AAACAC---CGTCGCGCCTTGCGTTCTGGCAGC-----GACATGACGCAGTT 3858 Query 39054 GTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATAAGAGCAACA-GAGTCT 39112 | || || | || || ||||| | |||||| |||| | ||| || | | || Sbjct 3857 TTGGACTGAATCCCTGACCAAAGAAGATGTTGTCCCCTAGCACCAGA-CACGATGGTTCA 3799 Query 39113 TCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGC-AAGACCTCGTGGCTCGGATTG 39171 || || ||| || ||| || || ||||| | ||| || | || ||||||| || Sbjct 3798 TCGTTGAGAAACGTTTCACCGATAATAAAAGCCTGCGCTAATCCATCCGGGCTCGG-CTG 3740 Query 39172 GATTGCGTAAGTG-AGTTTTATCCCAAACATAGACCCATCTCCGAGAAGATACTCAAAGT 39230 || | |||| |||| || || ||| ||||||||| || || ||| || || | Sbjct 3739 CTCAGCAT-AGTGCAGTTCAATGCCGAACTCAGACCCATCACCCAGCAGACGCTGGAAAT 3681 Query 39231 CTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATA 39290 | | ||| | ||||| ||||| || | || || ||| | |||| ||| | || Sbjct 3680 AGCCTTTATCTTCCGGTGTAGTGATAATCAGGATTTCGCGAATTCCCGCCAGCATTAGTA 3621 Query 39291 CCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACAC 39350 | |||| |||||||| ||||| || || || || | || | | ||||| || | Sbjct 3620 CTGATAGCGGGTAGTAAATCATTGGCTTATCGTAAATGGGCAATAGCTGCTTCGATACGC 3561 Query 39351 TGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCAT 39408 || || | |||| ||||| || || || ||||||| ||| ||||||||||| Sbjct 3560 CACGCGTAATGGGATACAGGCGAGTACCTGAGCCACCCGCCAGAATGATACCTTTCAT 3503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472563186049240