Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq914 129 8e-25 seq912 125 9e-24 seq913 123 3e-23 seq915 122 1e-22 seq8974 116 5e-21 seq5384 105 9e-18 >seq914 Length=7636 Score = 129 bits (142), Expect = 8e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || || || ||||| || ||||||||||||||||| ||| | || Sbjct 2520 ATGCAAATCTTTGTCAAGACTCTCACTGGTAAGACTATCACCCTCGAGGTCGAGGCCTCC 2579 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||| || |||||||| || || || ||||||||| Sbjct 2580 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCTCCCGATCAG 2639 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || || ||| Sbjct 2640 CAGCGTCTGATCTTCGCCGGT 2660 >seq912 Length=596 Score = 125 bits (138), Expect = 9e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || || || ||||| || |||||||||||||| ||| Sbjct 222 GTGGTATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTCGAGG 281 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| | || || ||||| || |||||||| || ||||| || | Sbjct 282 CCTCTGACACGATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCTG 341 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 ||||||| || || ||||| || |||| Sbjct 342 ATCAGCAGCGTCTCATTTTCGCCGGTA 368 >seq913 Length=4471 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || || || ||||| |||||||| || ||||| ||| Sbjct 86 GTGGTATGCAGATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTGGAGGTCGAGG 145 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || ||||| ||| | || || ||||| || ||||||||||||||||| || | Sbjct 146 CTTCGGATACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTG 205 Query 171977 ATCAGCAACGACTTATTTTTGCTGGT 172002 ||||||| || || || ||||| ||| Sbjct 206 ATCAGCAGCGTCTGATCTTTGCCGGT 231 >seq915 Length=7668 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||||||||| || || || || || ||||| ||||||||||| ||||||||| | Sbjct 3774 AGGATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTTGAGGCC 3833 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| ||||| || | || |||||||| || || ||||| || ||||| || ||| Sbjct 3834 TCCGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGAT 3893 Query 171979 CAGCAACGACTTATTTTTGCTGGTA 172003 ||||| || || || || || |||| Sbjct 3894 CAGCAGCGTCTCATCTTCGCCGGTA 3918 >seq8974 Length=654 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || |||||||| || ||||| | || || ||| | || Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTCGAGGCCTCG 330 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||| || || ||||| |||||||| ||||||||| Sbjct 329 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 270 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||| || |||| Sbjct 269 CAGCGTCTCATTTTCGCCGGTA 248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || ||||| || || ||||| || |||||||||||||| ||| | || Sbjct 88 ATGCAGATCTTCGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTCGAGGCTTCC 29 Query 171922 GACACAATCGATAACATCAAAGCCAAGA 171949 ||||| ||||| ||| |||| ||||||| Sbjct 28 GACACCATCGAGAACGTCAAGGCCAAGA 1 >seq5384 Length=661 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || || || || || || || ||||| | || || ||| | || Sbjct 404 ATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGGCCTCG 345 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || ||||| || || ||||| ||||| || ||||||||| Sbjct 344 GACACCATCGAAAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 285 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || |||||| Sbjct 284 CAGCGTCTGATCTTCGCTGGT 264 Score = 105 bits (116), Expect = 9e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||| ||||| ||| | || ||||| ||||| ||| ||||||||||||| || || Sbjct 661 ATCACCCTGGAGGTCGAGGCTTCCGACACCATCGAGAACGTCAAAGCCAAGATCCAGGAC 602 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTA 172003 |||||||| || || || ||||||||||| || || ||||| |||| Sbjct 601 AAGGAAGGAATCCCCCCTGATCAGCAACGTCTCATCTTTGCCGGTA 556 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || ||||| || |||||||||||||| || | || Sbjct 107 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACGATCACCCTCGAGGTCGAAGCCTCC 48 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCAT 171968 ||||| ||||| ||| | || |||||||| || || ||||| ||||| Sbjct 47 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657768843743440