Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq2856 273 6e-69 seq9459 168 2e-37 >seq2856 Length=3896 Score = 273 bits (302), Expect = 6e-69 Identities = 247/311 (79%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 23431 CACGCAGTTAAAGTGGCGGGCATACTCTTCAAGGCTGGTGATACCCAACCGCACCCATTT 23490 ||| |||||||||||||||||||||||||||||| | | ||| |||| ||||||||||| Sbjct 282 CACACAGTTAAAGTGGCGGGCATACTCTTCAAGGTTTGAGATCCCCAGACGCACCCATTT 341 Query 23491 AGGATGCGACCATTGCGGCAGACCGATGTAAATCATAACGCGTGAAGGATCTCTTCCACG 23550 |||||||||||| || || | |||||| ||||||||| ||| || |||||||| |||||| Sbjct 342 AGGATGCGACCACTGGGGTAAACCGATATAAATCATAGCGCTTGCAGGATCTCGTCCACG 401 Query 23551 CTACGCACACGGGCGATGCGCGGGTAGATATGATTAATGCTGTTATTGTGTTGCTCGGCG 23610 || || || || ||||| |||||| | ||||| | |||||| |||||| |||||| Sbjct 402 CTGCGTACGCGTGCGATACGCGGGAAAATATGCGTCATGCTGCCCCGGTGTTGATCGGCG 461 Query 23611 CTGGCGGCACTACAGGCGTCTTCGGCAATCACCAGATTAAAGCCAAGTTCCCAGGCATTG 23670 |||||||| |||||||||||||| |||| | ||||||||| || | ||||| ||||| Sbjct 462 CTGGCGGCGCTACAGGCGTCTTCTGCAACAATCAGATTAAAACCCAACTCCCACGCATTT 521 Query 23671 CGGGCGGTGGATTCAACACCGATATTGGTCGAGATCCCACATAACACAATTGTATCGATA 23730 || || || || || || || || || || ||||| || || || || || ||||| || Sbjct 522 CGCGCCGTCGACTCTACGCCAATGTTTGTGGAGATGCCGCACAAGACGATAGTATCAATG 581 Query 23731 CCTCGGCGGCG 23741 || || || || Sbjct 582 CCCCGACGACG 592 >seq9459 Length=5878 Score = 168 bits (186), Expect = 2e-37 Identities = 246/343 (72%), Gaps = 5/343 (1%) Strand=Plus/Minus Query 35671 ATGCATTCACTTGCGTATCAACACAATACCGGAATACACCCGGGAGCGATGATAAACCGC 35730 ||||| ||||| | ||| || |||| |||| || |||| ||||||||||| ||| Sbjct 3127 ATGCAGTCACTGTCACTTCATCAAAATAGCGGATATCAACCGGCTGCGATGATAAATCGC 3068 Query 35731 GCTCAACCTAAGGCGG-AGCCAGGTCACGACAAAATCCGCGATGCGGTCCGTGCATGGTC 35789 ||||||| ||| || | || ||| | ||||||||||| || ||||| ||| | Sbjct 3067 AATCAACCTGTCTCGGTAGATAAA-CATGACCAGATCCGCGATGCCGTTCGTGCGTGGGC 3009 Query 35790 GTCGTCCCTGGACAATCAGGACGTAGTGTCAGCGCTGATCATCAACGAATACCGGGAGCA 35849 | || | || |||||||||||| | || ||||||||| | || |||| || ||| Sbjct 3008 GG-GTG--TAGATGGTCAGGACGTAGTTACGGCTCTGATCATCGAAGAGTACCAGGCGCA 2952 Query 35850 GGGCGGTACCGCCATCAGCTTCCCAGAAGACATCAGCAGGGCGCGCCAGAAACTTTTTCG 35909 || || || ||| ||||| || ||| ||||| | ||| ||||| ||||| || Sbjct 2951 AGGGGGAGACGAGGTCACTTTCCCTGATGACCTCAGCCGACAGCGTCAGAAGCTTTTCCG 2892 Query 35910 CTTTCTGGATAACCGCTTCGACTCCGATCAGTACCGCGAGAACGTTAGAGAACTGACCCC 35969 |||||||||||||| ||| || ||| | ||||||||| |||||| | | ||||| || Sbjct 2891 CTTTCTGGATAACCATTTCAACAGCGAACGGTACCGCGAAAACGTTCGCCAGCTGACTCC 2832 Query 35970 GGCAATCATGGCTGTTCTTCCTGTTGAGTTTCGTACACGCCTG 36012 |||||| | ||||| ||||| | ||||| || | |||||| Sbjct 2831 GGCAATTCTTGCTGTCCTTCCACTCGAGTTCCGCAATCGCCTG 2789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147538464583488