Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq7475 188 1e-42 >seq7475 Length=18404 Score = 188 bits (208), Expect = 1e-42 Identities = 233/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 98892 ACTATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAAGGTACGCCGAAGAAA 98951 || |||||||||||| ||| | ||| |||| | | |||| || | ||| || Sbjct 17489 ACCATGAAACAGTATTTAGAACTGATGCAAAAAGTGCTGGATGAAGGCACACAGAAAAAC 17430 Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| || || |||||||| || || || || ||||||||||| || |||| Sbjct 17429 GACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAG 17370 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||| ||||||||||| ||||| || || ||||| | ||||| || || ||||| ||| Sbjct 17369 GAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCTG 17310 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||| || | ||||||||||| | |||||| | || || || | || Sbjct 17309 CTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAATC 17250 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 ||||||||||||||||| |||| || | | || ||||| || || || || ||||| Sbjct 17249 TGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCGC 17190 Query 99192 GCATGGACTGCGCATGATG 99210 || ||| || ||| |||| Sbjct 17189 GCGTGGCCTACGCCAGATG 17171 Score = 179 bits (198), Expect = 5e-40 Identities = 236/322 (73%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTA-GTGCCGACGTGTTCTTGGGTGTGCCGTTTAA 99643 ||| | || || || || ||||||||| |||| || |||||| | || |||||||||| Sbjct 17015 AAGCTCTCCTGCCAACTGTATCAGCGTTCGTGC-GATGTGTTCCTCGGCTTGCCGTTTAA 16957 Query 99644 CATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGG 99702 ||| || || | || || | |||||| | || |||||| |||| | ||| |||| Sbjct 16956 CATTGCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGA-TCTGGAAGTGG 16898 Query 99703 GCGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCAC 99762 | ||||| ||||||||||| || || ||| ||||| || ||| |||| || | | Sbjct 16897 GTGATTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGC 16838 Query 99763 GTACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGG 99822 | ||| | | ||| ||||| ||| |||| |||||| |||||||||||||||| | Sbjct 16837 ATCTGCAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTG 16778 Query 99823 ACTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGG 99882 | ||||| || |||||| |||||||| || || || ||||||||||| || || || | Sbjct 16777 AATCTATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTG 16718 Query 99883 CTATTAAAGCACCGGTGGCGAT 99904 ||||||||| || ||||| || Sbjct 16717 GTATTAAAGCGCCAGTGGCTAT 16696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 99307 ATATCGACCAGATTGCCAAAGTCATGGGCCAGTTGAAAAACGACCCGGATAATCGGCGTA 99366 |||| |||||||| ||| || | |||| | ||||| |||||||| ||| |||| Sbjct 17164 ATATTGACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGTA 17105 Query 99367 TCATCGTTAGTGCATGGAACGTAGCTGACCTTGACGATATGGCCTTAGCTCCTTGCCACG 99426 |||||||| ||||||||||| | || || || | ||||| | || || ||||| | Sbjct 17104 TCATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATG 17045 Query 99427 CCTTCTTCCAGTTTTA 99442 | |||||||||||||| Sbjct 17044 CGTTCTTCCAGTTTTA 17029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716534885289080