Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq4798 125 2e-24 >seq4798 Length=3577 Score = 125 bits (138), Expect = 2e-24 Identities = 260/386 (67%), Gaps = 27/386 (7%) Strand=Plus/Plus Query 29722 AACCACAGGAACAGGAGGTGAACCGTGGGTAAGCATC---ACTGGAAAGTAGAAAAACAG 29778 |||||||| | | ||||||| ||||||||| || | | |||||||| ||||||||| Sbjct 1683 AACCACAGCATTAAGAGGTGAGTCGTGGGTAATCAACCAGAGTGGAAAGTTGAAAAACAG 1742 Query 29779 CCTGAGTGGTACGTGAAAGCTGTCAGAAAAACTATCGCAGCGTTGCCgggggggTACGCT 29838 |||| |||| ||| || |||||| ||||||||| | || || || || || | Sbjct 1743 CCTGCGTGGCTGGTGGCTGCGATCAGAAGAACTATCGCTGATTTACCTGGTGGCTATGAA 1802 Query 29839 GAAGCTGCTGA----CTGG------------CTG--GATGTAA--CAGAGAAC----GCA 29874 ||||||||||| || | ||| || |||| | | ||| || Sbjct 1803 GAAGCTGCTGAAATCCTTGGGGTATATAAATCTGATGACGTAACCCCGGCAACCGATCCA 1862 Query 29875 TTATTTAACCGCCTTCGTGCCGATGGCGATCAGATTTTCCCGCTGGGATGGGCAATGGTT 29934 || |||||| |||||| | || ||||| || |||||| |||||||||| ||||| Sbjct 1863 TTGCATAACCGACTTCGTACTACCGGTGATCAAATCTTCCCGTTGGGATGGGCGATGGTC 1922 Query 29935 TTACAGCGTGCTGGTGGCACTCACTTCATTGCTGATGCTGTGGCGCAGTCTGCAAATGGC 29994 |||||| ||||||||| | || || || ||||||| || | | | || || Sbjct 1923 TTACAGGCTGCTGGTGGTTCAAACCATATCGCAAATGCTGTTGCCCGGAACTCGAACGGT 1982 Query 29995 GTCTTTGTGTCTCTTCCTGACGTCGAGGATGTGGACAACGCCGATATTAACCAGCGTCTG 30054 | |||||| | | | || || || ||||| || |||||||| || || ||||| || Sbjct 1983 CTATTTGTGCCATTGGCCGATGTTGATGATGTTGATAACGCCGACATCAATCAGCGCCTT 2042 Query 30055 CTGGAAGTCATTGAACAGATCGGCAG 30080 ||||| ||| || ||| ||||| Sbjct 2043 ATGGAATCCATCGAGTGGATTGGCAG 2068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132580485707538