Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1056 134 2e-25 seq1524 127 2e-23 >seq1056 Length=10972 Score = 134 bits (148), Expect = 2e-25 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| ||||||||||||| ||||| | || Sbjct 8441 GCTTGGCAAGCTCTCCGGGGAGGATAAGGCGGACGGCGGTCTGGACTTCGCGAGAAGAGA 8382 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| |||| ||||||||| |||||||| | ||||||| |||| | Sbjct 8381 TGGTGGACTTCTTGTTGTAGTGAGCCAGACGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 8322 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| |||| || ||| |||| Sbjct 8321 CGTCGTTGACGAAGGAGTTCATGATGGACATGGCCTTGGAAGAGACACCGGTGTCAGGGT 8262 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 | ||||||||||| || ||||||| | ||| ||||| || Sbjct 8261 GAACCTGCTTGAGGACACGGTAGATGTA-GACAGAGTAGGA 8222 >seq1524 Length=3248 Score = 127 bits (140), Expect = 2e-23 Identities = 290/426 (68%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGAT-GGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791 || || |||||||| || ||||||| || ||| | || || |||||||| || ||||| Sbjct 2833 CCATCCGTGCCGTTTTTAAAGCCGACCGGACAGGAG-AGCGCGGACGCCATTTCACGGTG 2891 Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA 1726851 | ||||| ||||| ||||||||||| | ||| ||||| || | |||||| || | || Sbjct 2892 GATTTGGCTTTCGGTGGTGCGCGCGCCAATGGCTCCCCAGGCGATCAGGTCGGCAATGTA 2951 Query 1726852 AGGGGCCACCAG-AGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGA 1726910 | | || ||| | || || ||| ||| | ||| | | | | || || | Sbjct 2952 TTGCGGGCTGAGCAGGTCC-AGGAATTCGGTGGCGATCGGCAGGCCCAGGCCGCTGATG- 3009 Query 1726911 GATCGCGCAACAGGCG--GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTC 1726968 || ||| ||| ||||||||| |||||| ||| | |||| | ||||| Sbjct 3010 --TCCAGCAGCAGTTCACGCGCGACGCG--CAGGCCTTCGTTGATGCGGAAGCTGCCGTC 3065 Query 1726969 GAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATA 1727028 |||| || ||| || || ||||||||| || ||||| |||||||||||||||| || Sbjct 3066 CAGGTACGGATCGTTGATCAAGCCCTTCCAGCCCACGGTGGTGCGCGGCTTTTCGAAGTA 3125 Query 1727029 GGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCAGGCG 1727088 ||||||| || | |||| ||| | || |||| | ||||| |||||| Sbjct 3126 CACGCGCATCACGATCTCCAGCGTGTCCTTGTACT--GCTCGCGTATGGGCGC-CAGGCG 3182 Query 1727089 TCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCAG 1727148 || | || |||| | |||||||||| ||||| || || || || ||||| ||||| Sbjct 3183 GCGTGCGTACTCGATGGCGGCCGCCGGATCGTGGATGGAGCAGGGGCCGACGATGACCAG 3242 Query 1727149 CAGCCG 1727154 ||| || Sbjct 3243 CAGGCG 3248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106205550101509