Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5384 93.3 8e-14 seq913 86.0 1e-11 >seq5384 Length=661 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || | || ||||| ||||| || || ||||| || || ||||| || Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || || || | || ||||||||||| || |||||||| || | Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 385 GTCTTGACAAAGATTTGCATT 405 >seq913 Length=4471 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | || ||||| || || || ||||||||||| || ||||| || Sbjct 230 CCGGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTAGCC 171 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || ||||| || || || |||| ||| || ||||| || || | Sbjct 170 TTCACGTTCTCGATGGTATCCGAAGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTGAGT 111 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 110 GTCTTGACGAAGATCTGCAT 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981684081196803