Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1056 149 9e-30 seq1524 100 4e-15 >seq1056 Length=10972 Score = 149 bits (164), Expect = 9e-30 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || ||||||||||| ||||| |||| || | ||| ||| || Sbjct 8237 ATCTACCGTGTCCTCAAGCAGGTTCACCCTGACACCGGTGTCTCTTCC------AAGGCC 8290 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||| | |||| ||||||| | |||||||| Sbjct 8291 ATGTCCATCATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATCGCCGCCGAGGCCTCC 8350 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||||||| ||| ||| | ||||| ||||||||||||| Sbjct 8351 CGTCTGGCTCACTACAACAAGAAGTCCACCATCTCTTCTCGCGAAGTCCAGACCGCCGTC 8410 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | | ||| || || |||| |||||||||||||||||| |||| Sbjct 8411 CGCCTTATCCTCCCCGGAGAGCTTGCCAAGCACGCCGTCTCCGAGGGAACCA 8462 >seq1524 Length=3248 Score = 100 bits (110), Expect = 4e-15 Identities = 318/478 (67%), Gaps = 20/478 (4%) Strand=Plus/Minus Query 165441 CGACTGTTGGTCGTCGTCGGTCCGTGTTCGGCACACGACCCGGACGCCGTTGTCGAGTAT 165500 || ||| ||||| ||||||| || || || ||||| |||| |||| ||||||| Sbjct 3248 CGCCTGCTGGTCATCGTCGGCCCCTGCTCCATCCACGATCCGGCGGCCGCCATCGAGTAC 3189 Query 165501 GGTCGGCGGTTGCGCGCCCTCGTACGGGCCGAGGTCGACGACGCCCTTTGTGTGGTCATG 165560 | || || || |||||| |||| | || | | ||| | || | || ||| Sbjct 3188 GCACGCCGCCTG-GCGCCCA--TACGCGAGCAGTACAAGGACACGCTGGAGATCGTGATG 3132 Query 165561 CGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGTGACCCC 165620 |||| || |||||||||||||||| ||||| || ||||||||| || || || || Sbjct 3131 CGCGTGTACTTCGAAAAGCCGCGCACCACCGTGGGCTGGAAGGGCTTGATCAACGATCCG 3072 Query 165621 GATCTTGATGGCTCGTGCCGCCTGGCTGATGGCCTTGATACATCGCGCCGC--CTGCTGC 165678 | || || ||| | |||| | || ||||| | |||||| ||||||| Sbjct 3071 TACCTGGACGGCAGCTTCCGCATCAACGAAGGCCTGCG--CGTCGCGCGTGAACTGCTGC 3014 Query 165679 GTGATCTCGTCGTCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTCAGTCCTCTGGTG- 165737 || | || || | | | || || | ||| ||| || || | ||| | | Sbjct 3013 TGGA---CATCAGCGGCCTGGGCCTGCCGATCGCCACCGAATTCCTG-GACCT--GCTCA 2960 Query 165738 GCCCCCTATT--TGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGA 165795 |||| | || | || |||||| || | ||||| ||| | || |||||||||||||| | Sbjct 2959 GCCCGCAATACATTGCCGACCTGATCGCCTGGGGAGCCATTGGCGCGCGCACCACCGAAA 2900 Query 165796 GCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTG-CCCATTGGCTTCAAAAACAGC 165854 |||| | ||||| || |||||||| ||||| | ||| || | ||||| |||||| || Sbjct 2899 GCCAAATCCACCGTGAAATGGCGTCCGCGCT-CTCCTGTCCGGTCGGCTTTAAAAACGGC 2841 Query 165855 ACCGACGGCAGCGTGGCGACGGCCCTCGATGCCGTGCGC-ACTGCCGC-CCAGCCACA 165910 || || |||| | | | || ||||||| | ||| || |||| ||||||||| Sbjct 2840 ACGGATGGCAACACGCGTATCGCTGTCGATGCGATCCGCGCCTCCCGCGCCAGCCACA 2783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176713867439074