Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq7475 104 4e-17 >seq7475 Length=18404 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 198047 GACCAGATCTCTAAGGTGATTGACCAGCTGCGTAACGATCCTGACAGTCGCCGTATTATT 198106 ||||||||| | | |||| | ||||||| || || || ||| ||||||||| || Sbjct 17159 GACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGTATCATC 17100 Query 198107 GTCAGCGCATGGAACGTGGGTGAGTTGGATCAAATGGCGTTAGCTCCGTGTCATGCGTTC 198166 || |||||||||||| || ||| ||||| |||||||| | || ||||| ||||||||| Sbjct 17099 GTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATGCGTTC 17040 Query 198167 TTTCAGTTCTAC 198178 || ||||| ||| Sbjct 17039 TTCCAGTTTTAC 17028 Score = 104 bits (114), Expect = 4e-17 Identities = 201/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672 ||||||| ||| | || ||||||| || | ||||| || || ||| ||| | Sbjct 17485 TGAAACAGTATTTAGAACTGATGCAAAAAGTGCTGGATGAAGGCACACAGAAAAACGACC 17426 Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732 |||| ||||| || |||||||| | ||||| | |||||||||||| || ||| ||| Sbjct 17425 GTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAGGAAG 17366 Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACT-CCACCTGCGTTCTATTATCCATGAACTGCTG 197791 | |||||| | || |||||||| | || ||| | || || || || ||||| |||||| Sbjct 17365 GGTTCCCGCTGGTTACGACTAA-ACGCTGCCATTTACGCTCGATCATTCATGAGCTGCTG 17307 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 ||||| | || || |||||| || ||| | || ||| ||| | || ||| Sbjct 17306 TGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAATCTGG 17247 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGTGCACAATGG 197905 || ||| |||||||| || || | ||||| | ||||| ||||||| Sbjct 17246 GACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGG 17193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769084211055160