Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5384 131 2e-25 seq915 131 2e-25 seq914 123 3e-23 seq913 120 3e-22 seq912 116 4e-21 seq8974 114 1e-20 >seq5384 Length=661 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| || ||||||||||| || ||| | || || ||| | Sbjct 405 AATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGGCCTC 346 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| |||||||||| || |||||||||||||| || ||||| || || Sbjct 345 GGACACCATCGAAAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 286 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| || || |||||| Sbjct 285 GCAGCGTCTGATCTTCGCTGGT 264 >seq915 Length=7668 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| |||||||| || |||||||||||| | Sbjct 3777 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTTGAGGCCTCC 3836 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 3837 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 3896 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || |||| Sbjct 3897 CAGCGTCTCATCTTCGCCGGTA 3918 >seq914 Length=7636 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 |||||||||||||||||||||| || || || |||||||| || || ||||| ||| | Sbjct 2518 TAATGCAAATCTTTGTCAAGACTCTCACTGGTAAGACTATCACCCTCGAGGTCGAGGCCT 2577 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | ||| ||||||| || || ||||| ||||||||||| ||||| || | Sbjct 2578 CCGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCTCCCGATC 2637 Query 27524 AGCAGCGTCTAATTTTTGCTGGT 27546 |||||||||| || || || ||| Sbjct 2638 AGCAGCGTCTGATCTTCGCCGGT 2660 >seq913 Length=4471 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||| ||| | Sbjct 91 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTGGAGGTCGAGGCTTCG 150 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || |||||||||| || ||||| ||||| || ||||| || || ||| Sbjct 151 GATACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGATCAG 210 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || ||||| ||| Sbjct 211 CAGCGTCTGATCTTTGCCGGT 231 >seq912 Length=596 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| || || || ||||| ||| | | Sbjct 227 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTCGAGGCCTCT 286 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||||||||| || ||||| |||||||||||||| || || ||| Sbjct 287 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCTGATCAG 346 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| ||||| || |||| Sbjct 347 CAGCGTCTCATTTTCGCCGGTA 368 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 ||||| || ||||| |||||||| | ||| ||||| ||| ||||| || |||| ||||| Sbjct 131 TTTGCAGGAAAGCAGCTCGAGGACGGTCGCACCCTTAGC-GACTACAACATCCAGAAGGA 189 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| |||||||| ||| | ||||| || ||||| Sbjct 190 ATCCACCCTTCATCTGGTCCTCCGTCTGCGTGGTGG 225 >seq8974 Length=654 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || ||| | || || ||| | Sbjct 390 AATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTCGAGGCCTC 331 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || |||||||||||||| ||||| || || || Sbjct 330 GGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCA 271 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||||| ||||| || |||| Sbjct 270 GCAGCGTCTCATTTTCGCCGGTA 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570229294732240