Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq8223 801 0.0 seq4798 181 4e-41 >seq8223 Length=9395 Score = 801 bits (888), Expect = 0.0 Identities = 759/969 (78%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 64921 TCATTATATCCATTTAACTAAGAGGACAATGCGGCATGAGTATACCCGCTAATGGACTGC 64980 || ||||||||||||||||||| |||| | |||||| ||||||| | | | | Sbjct 2826 TCGTTATATCCATTTAACTAAGGGGACGAAGCGGCACGAGTATAGCGTTTTTTCCTCACA 2767 Query 64981 GGGGTAAGTACGCTGCCGCTCGATTGCTTAAACCCTCGCCATTTATGCCGGGTTTTTATC 65040 ||||||| ||||| ||| |||| |||| || ||||||| || | ||||| | Sbjct 2766 ACGGTAAGTCTCAAGCCGCCCGACTGCTCAAACAGTCACCATTTAGTCCTGTTTTTTCTG 2707 Query 65041 ATTTTTCTTAATGTTTTCCGCACGTTCTGCTTTTTGGCGTGCTTCTGCTTTGCGCTTGTT 65100 ||||||| | | || |||| | ||||| | |||||| | ||||| ||||| Sbjct 2706 GTTTTTCTGCTTTTGCTCATCACGCTTTGCTTGCAACCTGGCTTCTTCCTTGCGTTTGTT 2647 Query 65101 GCTCATGTCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCA 65160 |||||| || || |||||||| ||||| ||||| | |||||||||||| || ||||| || Sbjct 2646 GCTCATATCATTGCGGATCTGCGCATGGCTCATCAGCGCGAAGATAAACGTTCCGCCACA 2587 Query 65161 GATGTTCCCCGCTAAAGTAGGTAGTGCGAAGGGCCAGATGAAATCGCTCCAGTGCAGCGT 65220 ||| || || || | || ||||| ||||||||||||| ||||| |||||||||||||| Sbjct 2586 GATATTTCCGGCGAGTGTTGGTAGCGCGAAGGGCCAGAAAAAATCACTCCAGTGCAGCGT 2527 Query 65221 ACCGTTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACC 65280 || ||||| ||||||||||| ||||| || |||||||| |||||||| ||||| || || Sbjct 2526 GCCATTAAAGACCAGATAGAGAATTTCCACCGAACCGACCACGATGTGCGTGGTATCGCC 2467 Query 65281 CAGGGCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGG 65340 | ||||| ||||||||||||| ||||| |||||||| ||||| || || || ||||| Sbjct 2466 TAACGCAATCAGCCAGGTCATCAGAATAATGACCACAATTTTTGCTGCCCCGGCAGCAGG 2407 Query 65341 AAACATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTC 65400 ||||||||| ||||| ||||| || | |||||| ||||| |||||||| | ||||||||| Sbjct 2406 AAACATCCACACCATCGTGGCAATTAACCAGCCAGAAATAATCGCGTTAGAAAACATCTC 2347 Query 65401 GCTGGGGGTGTTCTTCATCACATCCATGCCGATTTTGACAAATGCATCGCGAGTTTCTTC 65460 | ||| |||| |||||||| ||||| || |||||||| || |||||||| || ||||| Sbjct 2346 TGTTGGGCTGTTTTTCATCACGTCCATACCAATTTTGACGAAAGCATCGCGGGTCTCTTC 2287 Query 65461 ATTGAAGATTGGCATATATTCAAATGCCCACGCCGCAATACCTGTCCCGAGAATATTACC 65520 || || || ||||||| ||||| ||||| || |||| || || || | ||||||||| Sbjct 2286 ATCAAAAATAGGCATATGCTCAAACGCCCATGCTGCAACCCCGGTGCCAATAATATTACC 2227 Query 65521 CAGCAGCACGACGCCCCATAACCGCATAAGTAAGCCAACGTTGCTCATTGTCGGTTTTTG 65580 |||||| || |||| ||| | ||||| | ||||||| |||| | || || ||||| Sbjct 2226 CAGCAGAACCACGCTCCACAGGCGCATCAACAAGCCAAAATTGCCGAGGGTTGGGTTTTG 2167 Query 65581 CATGACGGGTAGTACCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGGCCATAAT 65640 ||| || || ||||| || || ||||| ||||||||||| | |||||||||||||||||| Sbjct 2166 CATCACCGGCAGTACGGCGGTGACGGTATTTTCGGTAAAGAGTTGCTGGCGGGCCATAAT 2107 Query 65641 GACGATAATAAAACCAAAGGTATAACCGAGATTCTCCAGCAAGAAGCTGCCCGGCACACC 65700 ||| |||||||| || |||||||||||||| |||||||| || || | || || || || Sbjct 2106 GACAATAATAAAGCCGAAGGTATAACCGAGGTTCTCCAGTAAAAATCCCCCTGGTACGCC 2047 Query 65701 TTCCAGTTCGACATGAAATATCCCTTTTGCCAGTAATGAAGCGCCCATCGACAGACCCGC 65760 |||||||| || ||||| |||||||| ||||||| || |||||||||||||| || || Sbjct 2046 TTCCAGTTGTACGTGAAAAATCCCTTTAGCCAGTAGCGAGGCGCCCATCGACAGCCCTGC 1987 Query 65761 CGCAATGGCTGACCACAGTAGTGCCATTGCGTCGCGTTCCAGCTCTTTTTCACCATCCTG 65820 || ||||||||||| | ||| ||||| |||||||| |||| |||||| || |||||||| Sbjct 1986 AGCGATGGCTGACCATAATAGCGCCATCGCGTCGCGCTCCATCTCTTTCTCCCCATCCTG 1927 Query 65821 GCGGATATGCTCATGAATTGCCATCGCCCGGGAGGGGAGTCGATCTTCATCTATTTCTAt 65880 ||||||||| ||||| || ||||| || ||||||||||| | || || || | || || Sbjct 1926 GCGGATATGTTCATGGATCGCCATGGCGCGGGAGGGGAGCCTGTCCTCGTCGACCTCAAT 1867 Query 65881 ttttttGCC 65889 ||||| || Sbjct 1866 CTTTTTACC 1858 Score = 123 bits (136), Expect = 1e-23 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1322 GTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCATT 1381 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2872 GTGTCCCCTGCAGGAATCGAACCTGCAACTAGCCCTTAGGAGGGGCTCGTTATATCCATT 2813 Query 1382 TAACTAAGAGGAC 1394 |||||||| |||| Sbjct 2812 TAACTAAGGGGAC 2800 >seq4798 Length=3577 Score = 181 bits (200), Expect = 4e-41 Identities = 290/419 (69%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 22775 ATGCGGGTGATGTTTGTCTGTCCGTACACCATCCTGCTGAACCAGACAGCGGAACGTTTC 22834 ||||| || |||||||| |||||| || | ||||| |||||||||| || ||| Sbjct 3143 ATGCGCGTAATGTTTGTGGCTCCGTATACGGTACTGCTTGACCAGACAGCCACCCGATTC 3202 Query 22835 ACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTATGGCGTGATCACCCTAACTAT 22894 | ||||| ||| | || | ||||| ||||||| ||| |||||||||||||| ||| Sbjct 3203 ATGGAATATGGTCTTCCTGGCGAAGAGATCAGTTATGTCTGGCGTGATCACCCGTCATAT 3262 Query 22895 GACCCGTCACGACTGATTCAGATTGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCT 22954 ||||| || || |||||||||||||| ||||| ||||| || || ||||| || || Sbjct 3263 AACCCGACAGCGCTTATTCAGATTGCCAGCGCCGATACGCTCATTCGCCGTGAATTCCCG 3322 Query 22955 GACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAGCGTCGTGCGTTACTTGAG 23014 ||||||||||| ||||||||| | || ||||| ||| |||| || | | || ||| Sbjct 3323 GACAACATCGACCTGCTGATCGTTGACGAAGCCCACCTGAAACGCAAAAAGCTGCTGGAG 3382 Query 23015 GTTAT------------CCGGGACAGAGACATCAGGGTTCTTGGACTTTCCGGCACCCCG 23062 ||||| ||| ||| | | | | ||| | || |||||||| || || Sbjct 3383 GTTATCGACAACCTGACCCGCAACACAAAAACGAAGGTGGTCGGTCTTTCCGGTACGCCT 3442 Query 23063 TTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGCTCAAGCCTACAACGATTCGTGAA 23122 ||||| | | || || ||||| | ||||| | ||||| |||||||| ||| Sbjct 3443 TTCGCCAAGTTCCTAGGCAATTACTATCAGCGCCTGATTAAGCCAACAACGATGAAGGAA 3502 Query 23123 CTTATTCAGCGTGGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCT 23181 || || | ||| | |||||| | ||||| |||| || || ||| || ||||| Sbjct 3503 CTGATCGCGATTGGCGCACTGAGCAAATACGAATTTTACGCGCCGTCACATCCCGATCT 3561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210901952873052