Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq9222 203 8e-48 seq9459 145 2e-30 >seq9222 Length=1580 Score = 203 bits (224), Expect = 8e-48 Identities = 178/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 20824 CATGAGGAACTTATTCAGGTCGCAGAAAATGAACGCCAGCGCCTGCTGACTCATGCTGAT 20883 ||||| || | ||||||| ||||| |||||||| ||| | || ||||| ||||||||| Sbjct 1003 CATGAAGAGTTAGTTCAGGTGGCAGAGAATGAACGGCAGAGACTCCTGACCCATGCTGAT 944 Query 20884 AAAGTGATGCTTGACTGGCGTACAGAGTTAATGCTGGGTGAAATCAGCGACGCTAACAGG 20943 || ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||| Sbjct 943 GCGGTAATGCTCGACTGGCGAACTGAGTTGATGCTGGGTGAAATCAGCGACGCCAACAGA 884 Query 20944 GATAAACTGTCGGCGTGGCTGGCATACAAGAGTGAGGTTAAGACAGTTGATGTGACAATT 21003 | |||||||||||||||| |||| || || | ||| ||||| | ||||||||||||| Sbjct 883 GCTAAACTGTCGGCGTGGATGGCTTATAAAAACGAGATTAAGGCGGTTGATGTGACAACC 824 Query 21004 ACCCCTGAAAATGTTAACTGGCCAGATATCCCGAAGATGTAG 21045 |||||| ||||||||||||| | | |||| || ||||| Sbjct 823 GACCCTGAGCATGTTAACTGGCCTGTTCCCCCGGAGGTGTAG 782 >seq9459 Length=5878 Score = 145 bits (160), Expect = 2e-30 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 28601 TGCCGATATCGCCCGGCCAGCGGAACGTTTATCACCTTCTGCGCGTTAACTTTTCCACCT 28660 |||| | ||||| ||| ||||||||||| |||| ||||||||||| | |||||| Sbjct 5409 TGCCCTTGTCGCCAGGCTGGCGGAACGTTTCAAACCTACTGCGCGTTAATCTCACCACCT 5350 Query 28661 CATTCCGGTCTTCGTATGCCCCGGACGGCTACTTCGTGGGCGTCCTGCCTGGGTGGTT 28718 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5349 CATTCCGGTCTTCGTATGCCCCGGACGGCTACTTCGTGGGCGTCCTGCCTTGGTGGTT 5292 Score = 125 bits (138), Expect = 2e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 27852 GGCTGAGGCCTTGGCCAAACCCGTTCAAATAGACTTCAACCAGCAAATCGGTTGTGTAAG 27911 ||||||| || || || | ||||||| ||| ||||||||||||||||| | ||||||| Sbjct 5722 GGCTGAGTCCATGCCCCAGACCGTTCAGATAAACTTCAACCAGCAAATCCTTGGTGTAAG 5663 Query 27912 TGCGCTCAATGCCGCGATGCAGGTAGAGGCGACCGCGTTTGTTTGCTGATGCAGTCCAGG 27971 | ||| | |||||| ||||| || | || ||||| ||| ||||| || ||||||| Sbjct 5662 TCATCTCCACGCCGCGGTGCAGATACAAACGTCCGCGAGCGTTAGCTGAAGCCGTCCAGG 5603 Query 27972 TGCCTTCACGATGCTTTACGAGCATTCCGGGCATAACGGCACCGCGGTTAACGGTCTGGG 28031 | || || || |||||||| || ||| ||| || |||||||| || ||||| | Sbjct 5602 TTGAGTCTTTGTGTTTGACGAGCATCCCCGGCTGAACTGCGCCGCGGTTTACCGTCTGTG 5543 Query 28032 TTCCATAGTGATGACTAATCAT 28053 | || ||||| ||| || ||| Sbjct 5542 TACCGTAGTGCTGATGAACCAT 5521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130228803467148