Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1550 111 4e-19 seq5384 105 2e-17 seq915 100 7e-16 seq8974 93.3 1e-13 seq914 87.8 4e-12 >seq1550 Length=4416 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || || |||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 1510 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 1451 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 1450 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 1391 Query 7845 ATA-TTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 1390 CGACTTAACGCGTTAGCT 1373 >seq5384 Length=661 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || || ||||| || || || |||||||| |||||||| | Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||||||||| |||| || || || || ||||| |||||||| || | | Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | ||||||| Sbjct 385 GTCTTGACAAAGATTTGCATT 405 >seq915 Length=7668 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || || || || || |||||||| |||||||| |||||||| | Sbjct 3916 CCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCC 3857 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||||| |||| || || || | ||||| ||||| || || | | Sbjct 3856 TTCACATTCTCGATGGTGTCGGAGGCCTCAACCTCAAGGGTGATAGTCTTTCCGGTGAGA 3797 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 3796 GTCTTGACGAAGATTTGCAT 3777 >seq8974 Length=654 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || || || || || ||||| ||||| || |||||||| |||||||| | Sbjct 250 CCGGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCC 309 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||||| |||| || || || || ||||| ||||| || || | | Sbjct 310 TTCACATTCTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTGAGA 369 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 370 GTCTTGACAAAGATCTGCATT 390 >seq914 Length=7636 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || || || ||||| || || || ||||| || |||||||| | Sbjct 2659 CCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATTCCCTCCTTATCCTGGATCTTGGCC 2600 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||||| |||| || || || | ||||| ||||| || || | | Sbjct 2599 TTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATAGTCTTACCAGTGAGA 2540 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | ||||||| Sbjct 2539 GTCTTGACAAAGATTTGCATT 2519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192357367335638