Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq7475 185 1e-41 >seq7475 Length=18404 Score = 185 bits (204), Expect = 1e-41 Identities = 216/289 (75%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 99883 CGATGTGTTCTTAGGGGTGCCGTTTAATATTGCGTCATACGCTTTGTTGATCCACATGTT 99942 |||||||||| | || |||||||||| ||||| ||| | ||||| | |||||| | Sbjct 16983 CGATGTGTTCCTCGGCTTGCCGTTTAACATTGCCAGCTACTCCCTGTTGGTGCACATGAT 16924 Query 99943 TGCACAGCAG-GCTAACATGACCGTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATC 100001 || |||||| || | | || ||||||||||| |||||| | ||||| ||| || | Sbjct 16923 GGCGCAGCAGTGCGATCTGGAA-GTGGGTGATTTTGTCTGGACCGGTGGCGACACGCACC 16865 Query 100002 TGTACAATAACCATCTGGAACAAACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTAC 100061 |||||| || ||| |||| ||||| | | ||| | | |||| ||||| || | | Sbjct 16864 TGTACAGCAATCATATGGATCAAACGCATCTGCAGCTTAGCCGTGAACCGCGCGCGCTGC 16805 Query 100062 CTAAGCTGATTATCAAACGTAAGCCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCG 100121 | |||||| |||||||||||||||| || || || || || ||| || |||||||||| Sbjct 16804 CGAAGCTGGTTATCAAACGTAAGCCTGAATCTATTTTTGACTATCGCTTCGAAGACTTCG 16745 Query 100122 AACTTGAAGGCTACGACCCGCATCCTGCAATCAAAGCACCGGTCGCGAT 100170 || ||||||||||||| |||||||||| || ||||| || || || || Sbjct 16744 AAATTGAAGGCTACGATCCGCATCCTGGTATTAAAGCGCCAGTGGCTAT 16696 Score = 161 bits (178), Expect = 1e-34 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 99185 GAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAG 99244 |||||| | ||| || |||||||| |||||||| || || || ||||| || || ||| Sbjct 17447 GAAGGCACACAGAAAAACGACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAG 17388 Query 99245 ATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGT 99304 |||||||| |||||||| ||||| || |||||||| |||||||| ||||| || | || Sbjct 17387 ATGCGTTTTAATCTGCAGGAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGC 17328 Query 99305 TCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAAT 99364 ||||| ||||| || ||||||||||| || | ||||| ||||| || || | || Sbjct 17327 TCGATCATTCATGAGCTGCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCAT 17268 Query 99365 GATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTA 99424 || || || | || |||||||||||| | | || | || | | || ||||| Sbjct 17267 GAAAACAACGTCTCAATCTGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTT 17208 Query 99425 TACGGTAAACAGTGGCGGTCTTGGCCT 99451 || || ||||| ||||| | |||||| Sbjct 17207 TATGGCAAACAATGGCGCGCGTGGCCT 17181 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 99569 CAGATCGACCAAATCTCCAAGGCCATGGACCAGTTGAAAAACGACCCGGATAACCGTCGT 99628 || || ||||| ||| ||| || | ||||| | ||||| |||||||| || ||| Sbjct 17165 CATATTGACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGT 17106 Query 99629 ATCATCGTGTCGGCATGGAACGTAGCTGACCTCGACGAAATGGCTTTAGCACCGTGCCAC 99688 |||||||| || ||||||||||| | || || || ||||||| | || |||||||| Sbjct 17105 ATCATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCAT 17046 Query 99689 GCATTCTTCCAGTTCTAC 99706 || ||||||||||| ||| Sbjct 17045 GCGTTCTTCCAGTTTTAC 17028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716362109863400