Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq7475 122 1e-22 >seq7475 Length=18404 Score = 122 bits (134), Expect = 1e-22 Identities = 154/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 || || ||||||||||| ||||| |||| ||| | || || |||||||| ||| | Sbjct 17435 AAAAACGACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAAT 17376 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| ||||| ||||| ||||| || || ||| || | || || |||||||| Sbjct 17375 CTGCAGGAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCAT 17316 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 |||||||||||||| || | || ||||||||| | |||||| | || ||| ||| Sbjct 17315 GAGCTGCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTC 17256 Query 202723 ACTATCTGGGACGAATGGGCGCGGGATGAAA 202753 | ||||||||||||||||| |||||||| Sbjct 17255 TCAATCTGGGACGAATGGGC---GGATGAAA 17228 Score = 114 bits (126), Expect = 2e-20 Identities = 218/321 (68%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || || || |||||||||| |||||| ||| | ||| ||||||||||||| Sbjct 17012 CTCTCCTGCCAACTGTATCAGCGTTCGTGCGATGTGTTCCTCGGCTTGCCGTTTAACATT 16953 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAG 203409 ||| || | | || | ||| | || |||||| | | ||| | | || Sbjct 16952 GCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGAT 16893 Query 203410 TTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTG 203469 || |||||||| || || || || || ||||| ||| ||| |||| || | | |||| Sbjct 16892 TTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATCTG 16833 Query 203470 CAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCT 203529 ||| | | ||||| |||| | | | ||| ||| ||||||||||||| || ||| Sbjct 16832 CAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAATCT 16773 Query 203530 ATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGCCATC 203589 || || ||||| | ||||||||||| ||||| |||||||||| | | || | || Sbjct 16772 ATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTATT 16713 Query 203590 AAAGCACCGGTTGCCATTTAA 203610 ||||| || || || || ||| Sbjct 16712 AAAGCGCCAGTGGCTATCTAA 16692 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 202963 GGCCCAGTATACGGAAAACAGTGGCGGGATTGGGTTGGTGCAGATGGTCGGCATCATGAC 203022 ||||| || || || ||||| ||||| | ||| | ||||||| || ||| |||| Sbjct 17216 GGCCCGGTTTATGGCAAACAATGGCGCGCGTGGCCTACGCCAGATGGACGCCATATTGAC 17157 Query 203023 CAAATCACCAAAGTCATCGACCAGCTGCGTAACGATCCGGATAACCGCCGCATTATTGTC 203082 || ||||||| || | ||||||| || || ||||| ||||| || || || Sbjct 17156 CAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGTATCATCGTT 17097 Query 203083 AGCGCATGGAATGTCGGTGAGTTGGACCAGATGGCGTTAGCACCGTGTCATTCTTTCTTC 203142 ||||||||| ||||| ||| |||| | |||||| | || ||||| ||| | |||||| Sbjct 17096 TCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATGCGTTCTTC 17037 Query 203143 CAGTTCTA 203150 ||||| || Sbjct 17036 CAGTTTTA 17029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788207891042000