Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq7475 152 8e-32 >seq7475 Length=18404 Score = 152 bits (168), Expect = 8e-32 Identities = 226/318 (71%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCG-GACGTGTTCTTAGGTGTGCCGTTCAATAT 100225 || ||||| ||||| || || ||| || | || |||||| | || ||||||| || || Sbjct 17012 CTCTCCTGCCAACTGTATCAGCGTT-CGTGCGATGTGTTCCTCGGCTTGCCGTTTAACAT 16954 Query 100226 CGCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGA 100285 || ||| | ||| |||| |||||| | || || || | | ||| ||||| || Sbjct 16953 TGCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGA 16894 Query 100286 CTTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTAC 100345 || |||||||| ||||| ||| || ||||| ||| ||| |||| || || | | Sbjct 16893 TTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATCT 16834 Query 100346 TCAGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTC 100405 ||||| | || |||||| | | || || |||||||||| ||||||||||| || Sbjct 16833 GCAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAATC 16774 Query 100406 TATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCAT 100465 ||| || |||||| || ||||||||||| ||||| | |||||| || | || | || Sbjct 16773 TATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTAT 16714 Query 100466 TAAAGCGCCGGTGGCGAT 100483 ||||||||| ||||| || Sbjct 16713 TAAAGCGCCAGTGGCTAT 16696 Score = 149 bits (164), Expect = 9e-31 Identities = 219/308 (71%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 99467 CATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGA 99526 ||||||||| ||||| ||| | ||| || || | |||||||| ||| ||| Sbjct 17487 CATGAAACAGTATTTAGAACTGATGCAAAAAGTGCTGGATGAAGGCACACAGAAAAACGA 17428 Query 99527 CCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGA 99586 |||||| || || || ||| | || | ||||| ||||| |||||||||||| || || Sbjct 17427 CCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAGGA 17368 Query 99587 AGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCT 99646 ||| || || ||||| || ||||| ||||| || | || || || |||||||| || || Sbjct 17367 AGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCTGCT 17308 Query 99647 TTGGTTCCTGAAAGGGGATACCAA--TACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704 ||||| || | || || ||||| | || |||||| | || ||| |||| | ||| Sbjct 17307 GTGGTTTTTGCAGGGCGACACCAACGTTGCC--TACCTGCATGAAAACAACGTCTCAATC 17250 Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764 ||| | || |||| | || |||||| | ||||| ||||| || || || || ||||| Sbjct 17249 TGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCGC 17190 Query 99765 TCTTGGCC 99772 | ||||| Sbjct 17189 GCGTGGCC 17182 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 99894 ATTGACCAAATCTCCAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCATT 99953 |||||||| ||| ||| ||| | ||||| | ||||| ||||| || || || || Sbjct 17162 ATTGACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGTATC 17103 Query 99954 ATTGTCAGTGCATGGAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGCG 100013 || || ||||||||||| | ||| || || | ||||| | ||||| ||||||||| Sbjct 17102 ATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATGCG 17043 Query 100014 TTCTTCCAGTTCTAC 100028 ||||||||||| ||| Sbjct 17042 TTCTTCCAGTTTTAC 17028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734170776888120