Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq7475 100 3e-16 >seq7475 Length=18404 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 42297 CCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCA 42356 || ||| |||| | ||||||||||||||||||||| | || |||||||||||||| Sbjct 17120 CCGGACTCTCGCCGTATCATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCG 17061 Query 42357 TTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAG 42416 || ||||| || ||||||||||| |||| | || || || || || Sbjct 17060 CTGGCGCCGTGCCATGCGTTCTTCCAGTTTTACGTAGCGGATGGCAAGCTCTCCTGCCAA 17001 Query 42417 TGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCT 42476 ||||||||||||| ||||| ||| | || |||||||| || || ||| |||| | Sbjct 17000 CTGTATCAGCGTTCGTGCGATGTGTTCCTCGGCTTGCCGTTTAACATTGCCAGCTACTCC 16941 Query 42477 CTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACA 42536 || || ||| || || || | |||| ||||| |||||| | || ||||| Sbjct 16940 CTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGATTTTGTCTGGACC 16881 Query 42537 GGTGGTGA 42544 ||||| || Sbjct 16880 GGTGGCGA 16873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576490804140680