Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq7475 192 9e-44 >seq7475 Length=18404 Score = 192 bits (212), Expect = 9e-44 Identities = 240/324 (74%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTA-GTGCGGACATGTTCCTTGGCGTACCGTTTAACAT 202548 || || || || || ||||||||| ||||| | ||||||| ||| | ||||||||||| Sbjct 17012 CTCTCCTGCCAACTGTATCAGCGTTCGTGCG-ATGTGTTCCTCGGCTTGCCGTTTAACAT 16954 Query 202549 CGCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCG 202607 || ||| || || |||| |||||| | || || ||| |||| | ||| || || | Sbjct 16953 TGCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATC-TGGAAGTGGGTG 16895 Query 202608 ACTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACC 202667 | || |||||||| ||||| || ||||| |||||| ||| ||| |||| ||| | | | Sbjct 16894 ATTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATC 16835 Query 202668 TCCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATT 202727 | || |||| |||||| || || | |||||| ||||||||||||||||||| || | Sbjct 16834 TGCAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAAT 16775 Query 202728 CCATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGA 202787 | || || ||||| |||||||||||||| ||| | ||| | ||||||| | | Sbjct 16774 CTATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTA 16715 Query 202788 TTAAAGCGCCCGTCGCGATCTAAC 202811 |||||||||| || || ||||||| Sbjct 16714 TTAAAGCGCCAGTGGCTATCTAAC 16691 Score = 172 bits (190), Expect = 9e-38 Identities = 182/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || || || || || |||| || | |||||||| ||||| | || Sbjct 17430 CGACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCA 17371 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 ||||| || |||||||| || || ||| || | || || ||||| |||||||| Sbjct 17370 GGAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCT 17311 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 ||||||||| | ||| ||||||||| | || || | || ||||||||| | || Sbjct 17310 GCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAAT 17251 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||||||||||||| |||||||| | ||||||||||| || || || |||||||| Sbjct 17250 CTGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCG 17191 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 202205 ATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTATT 202264 |||||||| ||| ||| ||| | ||||||| |||||||| ||| || ||||| Sbjct 17162 ATTGACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGTATC 17103 Query 202265 ATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACGAGATGGCCTTGGCCCCGTGTCATGCG 202324 || || ||| |||||||| | ||||| || | ||||| |||| ||||| |||||| Sbjct 17102 ATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATGCG 17043 Query 202325 TTCTTCCAGTTCTAC 202339 ||||||||||| ||| Sbjct 17042 TTCTTCCAGTTTTAC 17028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787891136094920