Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq7475 138 2e-27 >seq7475 Length=18404 Score = 138 bits (152), Expect = 2e-27 Identities = 226/323 (70%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTA-GCGCTGATATGTTTTTAGGCGTGCCGTTC 200892 || |||| ||||| || |||||||||||| | || ||| |||| | ||| ||||||| Sbjct 17017 GCAAGCTCTCCTGCCAACTGTATCAGCGTTCGTGC-GATGTGTTCCTCGGCTTGCCGTTT 16959 Query 200893 AACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTC 200952 |||||||| ||| | || || | |||||| | || || ||| | || || || Sbjct 16958 AACATTGCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTG 16899 Query 200953 GGTGATTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTT 201012 |||||||| || ||||| ||||| ||| ||| | ||||||||||| || || Sbjct 16898 GGTGATTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACG 16839 Query 201013 CGTCTGCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCG 201072 | |||||| || ||||| ||||| | | |||||| || || |||||||| Sbjct 16838 CATCTGCAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCT 16779 Query 201073 GACTCTATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCT 201132 || ||||| || || || ||||||||||| || || || ||||| ||||||||| Sbjct 16778 GAATCTATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCT 16719 Query 201133 GCGATAAAAGCACCGGTGGCGAT 201155 | || ||||| || ||||| || Sbjct 16718 GGTATTAAAGCGCCAGTGGCTAT 16696 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 200503 GGTGAGTTAGGGCCTGTGTATGGTAAGCAGTGGCGTGATTGGATCGGGCCAGATGGTCAA 200562 ||| | ||||| || || ||||| || || ||||| | ||| ||||||||| | Sbjct 17225 GGTAATTTAGGCCCGGTTTATGGCAAACAATGGCGCGCGTGGCCTACGCCAGATGGACGC 17166 Query 200563 CACCACGACCAAATCAGCACGGTCATCGACCAGCTACGTAATGATCCGGACAGTCGTCGC 200622 || ||||| |||| |||||| | ||||||| ||||| |||||| ||| || Sbjct 17165 CATATTGACCAGATCACCACGGTGTTAAACCAGCTCAAAAATGACCCGGACTCTCGCCGT 17106 Query 200623 ATTATCGTTAGTGCATGGAATGTGGGTGAGTTGGATAAAATGGCTTTAGCGCCTTGCCAT 200682 || |||||| |||||||| || || ||| ||||||||||||| | ||||| |||||| Sbjct 17105 ATCATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCAT 17046 Query 200683 TCCTTCTTCCAGTTCTAC 200700 | ||||||||||| ||| Sbjct 17045 GCGTTCTTCCAGTTTTAC 17028 Score = 111 bits (122), Expect = 2e-19 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 200092 AAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAAT 200151 || || ||||||||||| | || || ||||| ||| |||||||| || ||| Sbjct 17435 AAAAACGACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAAT 17376 Query 200152 CTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCAC 200211 || || || || ||||| |||| ||||| || |||||| | || || |||||||| Sbjct 17375 CTGCAGGAAGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCAT 17316 Query 200212 GAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTC 200271 |||||| ||||||| | | || |||||||| | || ||| | || ||||| ||| Sbjct 17315 GAGCTGCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTC 17256 Query 200272 ACCATTTGGGACGAATGGGCG 200292 | || ||||||||||||||| Sbjct 17255 TCAATCTGGGACGAATGGGCG 17235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783248596416000