Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq7475 185 1e-41 >seq7475 Length=18404 Score = 185 bits (204), Expect = 1e-41 Identities = 225/304 (74%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGT-CACGAGAAAGCTGA 196072 |||||||||||||| ||| ||||||| | ||| || | ||||| ||| ||||| || Sbjct 17486 ATGAAACAGTATTTAGAACTGATGCAAAAAGTGCTGGATGAAGGCACAC-AGAAAAACGA 17428 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||||||||| || || || | || ||||| || |||||||||||||| | |||| | Sbjct 17427 CCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAGGA 17368 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 ||||||||||||||| || || ||| | || | || || ||||| || || ||| | Sbjct 17367 AGGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCTGCT 17308 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||| || | |||||||||||| | || ||| | || ||||||||| ||||| Sbjct 17307 GTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAATCTG 17248 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGC 196312 ||| || ||||| |||||| | || || | ||||| || || || || || ||||| || Sbjct 17247 GGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCGCGC 17188 Query 196313 ATGG 196316 ||| Sbjct 17187 GTGG 17184 Score = 172 bits (190), Expect = 8e-38 Identities = 233/322 (72%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCA-GTGCAGACGTCTTCCTCGGTGTCCCGTTCAACAT 196807 || ||||| || || || ||||| |||| || || |||||||| | ||||| ||||| Sbjct 17012 CTCTCCTGCCAACTGTATCAGCGTTCGTGC-GATGTGTTCCTCGGCTTGCCGTTTAACAT 16954 Query 196808 CGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGA 196867 || ||| | |||||||| |||||| |||| |||||| | || ||| | |||||| Sbjct 16953 TGCCAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGA 16894 Query 196868 TTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTT 196927 ||| |||||||| || ||||| || || |||||| || ||| |||| || | | Sbjct 16893 TTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATCT 16834 Query 196928 GCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTC 196987 |||||| ||||| ||||| | ||||| ||||| |||||||||||||| || || || Sbjct 16833 GCAGCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAATC 16774 Query 196988 CATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCAT 197047 ||||| |||||| |||||||| || ||||| | || ||||| || || || Sbjct 16773 TATTTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTAT 16714 Query 197048 TAAGGCACCGGTTGCCATCTAA 197069 ||| || || || || |||||| Sbjct 16713 TAAAGCGCCAGTGGCTATCTAA 16692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770197652687320