Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq9999 401 4e-107 >seq9999 Length=7021 Score = 401 bits (444), Expect = 4e-107 Identities = 658/944 (70%), Gaps = 6/944 (1%) Strand=Plus/Plus Query 97052 TGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCG 97111 ||||||||||||||||| || | | | || || | ||| | ||||||||| Sbjct 3 TGCAGGTAGTCGATCATGATAAGTCCGATGCCGCCGTGTTCACGGGCGATACGACGAGCA 62 Query 97112 CGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTG 97171 || || || | || || ||||||||| || |||||||||||| | || || | || Sbjct 63 CGCGAGCGCACTTCCGTTGGCGTCAGGCCGGAGGAGTCATCAATATAGATGTTTCGTTTC 122 Query 97172 TCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCT 97231 |||| || ||||||||||| || |||| |||||||| ||||| || | ||||| || Sbjct 123 TCCAGCAAAATACCCATTGTTCCGGAAATTCGCGCCCAGTCCTCATCATCCAGTTGACCA 182 Query 97232 GTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGG 97291 || ||||| || || || ||||||| || || ||||| || |||||||| | ||| Sbjct 183 GTACGAATTTTGGTTTGGTCTACGCGTGAGAGCGAGGCCAGGGAACGCATCATGATCTGT 242 Query 97292 TGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTT 97351 | ||||| ||||| || || | | || |||||||| | | || |||||| Sbjct 243 TCTGAGGGCATTTCAAGACTGAAGATAAGAACCGGCTTATCCTGCAACATCGCCGCATTT 302 Query 97352 TCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATG 97411 |||||||| ||||| ||||| || || || ||||| || || || ||||||||||| || Sbjct 303 TCGACGAGGTTCATTGCAAATGTCGTTTTACCCATCGACGGACGCGCGGCGACAATAATT 362 Query 97412 AGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGT 97471 | || |||| ||| | || |||||||| ||||| || ||| | | ||||| | | Sbjct 363 AAGTCTGACGGCTGCAAACCAGCCGTCTTTTTATTAAGGTCGTCATAACCGGTGTTTACC 422 Query 97472 CCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCG 97531 || || || || || ||||| |||| || |||| || || || | || ||||| ||| Sbjct 423 CCGGTGACGCCGTCGTGCGGCTGCTGGAATAACTGCTCGATACGCGCGACGGTTGCGTCG 482 Query 97532 AGAATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTTGTCGTT--TTTCAGCTATTT 97589 || | || ||||| ||| || || | | || | ||| || |||| || |||| Sbjct 483 AGCACATCGGTGATATTTTTCGGCCC--TTCGTCTTTGTTGGCGCGGCTTTCTGCAATTT 540 Query 97590 CAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCAT 97649 ||| |||||| ||| || | ||||||| || | ||| ||||| | | || Sbjct 541 TAAAGACGCGGGATTCCGCAAGGTCCAGCAGATCTTCACTGGAACGGCCTTGTGGATCAA 600 Query 97650 ATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCAC 97709 | |||||||| || |||||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 601 ACCCAGCTTCCGCGATTTCATTCGCGACCGAAATCATGTCACGAACAACTGCACGTTCTC 660 Query 97710 GAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCG 97769 | || ||||| |||||||| | |||||| ||||| || ||||| || || || | ||| | Sbjct 661 GGACAATATCAGCATAAGCGCTAATATTCGCCGCACTTGGCGTATTTTTAGATAACTCAG 720 Query 97770 CAAGGTACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTCAGCAA 97829 | || || |||||||| ||| ||| || | || || | || || | |||||| | Sbjct 721 CCAGATAAGCAAAACCGCCGACGCTGTCCAGTTGCCCCTGAACCTCCAGCGATTCAGCGA 780 Query 97830 GTGTTATCAAATCAATCGGTTTGCC-ATGACTTAATAACCTCTCCATCTCACTGAAAATT 97888 | || |||| ||| || ||||| || || | | | | | ||| || |||| || Sbjct 781 GCGTGATCAGATCGATGGGTTTCCCCATCTCCTGC-AGGCGATGCATTTCCGTGAAGATA 839 Query 97889 TCACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCAG 97948 | || || | |||||||||||| || || || | ||| || || || || |||||| Sbjct 840 TGCCGGTGCGGTCGGGTATAAAAATCCTCCGCCACCACACGCTCGGCGACATCGTCCCAG 899 Query 97949 CGGCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 || |||||| |||||||| || || | || | ||||| || Sbjct 900 CGTTCGTTATCCAGCATTAAACCGCCCAACACCGACTGTTCCGC 943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330853318447582