Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq7475 178 5e-40 >seq7475 Length=18404 Score = 178 bits (196), Expect = 5e-40 Identities = 330/478 (69%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 51861 GAGTTGCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTC 51920 ||| |||||||||| | |||| || ||||| | | || ||| | || |||| Sbjct 17315 GAGCTGCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTC 17256 Query 51921 AGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAG 51980 || ||||||||||||||||||||||| ||||| | || || || ||||| || || Sbjct 17255 TCAATCTGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAA 17196 Query 51981 TGGCGTAGTTGGGATGCT---GGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTC 52037 ||||| ||| | | | ||| || | || || |||||| | | | || Sbjct 17195 TGGCGCGCGTGGCCTACGCCAGATGGACGCCAT---ATTGACCAGATC-ACCACGGTGTT 17140 Query 52038 AAATCAATT-AAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGG 52096 ||| || | || || || || || ||| || ||| || || || ||||| || || Sbjct 17139 AAACCAGCTCAAAAATGACCCGGACTCTCGCCGTATCATCGTTTCCGCATGGAACGTCGG 17080 Query 52097 TGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGA 52156 || ||||| | |||||| |||| || |||||| | | ||||| || || ||||| || Sbjct 17079 CGAGCTGGATAAAATGGCGCTGGCGCCGTGCCATGCGTTCTTCCAGTTTTACGTAGCGGA 17020 Query 52157 AGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTT 52216 || ||||| || ||||| |||||||||| || ||| ||||| | ||| | ||||| Sbjct 17019 TGGCAAGCTCTCCTGCCAACTGTATCAGCGTTCGTGCGATGTGTTCCTCGGCTTGCCGTT 16960 Query 52217 TAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATG 52275 ||||||||||||||| ||| || || ||| |||| || | |||||| | || || | Sbjct 16959 TAACATTGCCAGCTACTCCCTGTTGGTGCACATGATGGCGC-AGCAGTGCGATCTGGAAG 16901 Query 52276 TTGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCA 52333 | ||||| || | ||||| ||||||||| || | |||| ||| ||| | ||||| Sbjct 16900 TGGGTGATTTTGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCA 16843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190070317673970