Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq913 122 2e-22 seq912 113 9e-20 seq8974 111 3e-19 seq5384 111 3e-19 seq915 109 1e-18 >seq913 Length=4471 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || || ||| ||||| || ||||| || |||||||| || Sbjct 230 CCGGCAAAGATCAGACGCTGCTGATCAGGGGGAATGCCTTCCTTATCCTGGATCTTAGCC 171 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| || |||||||| ||||| || |||||||| ||||| || || | Sbjct 170 TTCACGTTCTCGATGGTATCCGAAGCCTCGACCTCCAGAGTGATAGTCTTTCCGGTGAGT 111 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 110 GTCTTGACGAAGATCTGCAT 91 >seq912 Length=596 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| || || | ||| || || ||| ||||| |||||||| || |||||||| || Sbjct 366 CCGGCGAAAATGAGACGCTGCTGATCAGGGGGAATTCCCTCCTTATCCTGGATCTTAGCC 307 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || ||||| ||||| ||||||||||| || || | Sbjct 306 TTCACGTTCTCGATCGTGTCAGAGGCCTCGACCTCGAGGGTGATCGTCTTTCCGGTGAGT 247 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 246 GTCTTGACGAAGATCTGCAT 227 >seq8974 Length=654 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| || || | ||| || || || ||||| ||||||||||| |||||||| || Sbjct 250 CCGGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCC 309 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| || |||||||| | |||||| ||||| || || | | Sbjct 310 TTCACATTCTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTTCCAGTGAGA 369 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || ||||||||| Sbjct 370 GTCTTGACAAAGATCTGCATT 390 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071 |||| || || ||| | ||||| ||||| ||||| ||||| ||||| ||||||||||| | Sbjct 1 TCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCGAGGGTGATCGTCTTTC 60 Query 283072 CCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || | ||| || ||||| ||||||||| Sbjct 61 CGGTGAGAGTTTTGACGAAGATCTGCATT 89 >seq5384 Length=661 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||||| ||| || || || || || ||||||||||| |||||||| || Sbjct 265 CCAGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCC 324 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| |||||||| || |||||||| | |||||| ||||| || || | | Sbjct 325 TTCACGTTTTCGATGGTGTCCGAGGCCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGA 384 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || || |||||| Sbjct 385 GTCTTGACAAAGATTTGCATT 405 Score = 109 bits (120), Expect = 1e-18 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || |||||||| Sbjct 1 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGGAGGCTTCGACC 60 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||||||||| || || | ||||| ||||| ||||||||| Sbjct 61 TCGAGGGTGATCGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 108 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | |||||| || ||| || || || |||||||| |||||||| ||| Sbjct 558 CCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCT 617 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGAT 283063 || ||| | ||||| ||||| ||||| ||||| || || ||||| Sbjct 618 TTGACGTTCTCGATGGTGTCGGAAGCCTCGACCTCCAGGGTGAT 661 >seq915 Length=7668 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||| | ||| || || ||| ||||||||||||||||| |||||||| || Sbjct 3916 CCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCC 3857 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || || || || || || ||||| ||||| || || | | Sbjct 3856 TTCACATTCTCGATGGTGTCGGAGGCCTCAACCTCAAGGGTGATAGTCTTTCCGGTGAGA 3797 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 3796 GTCTTGACGAAGATTTGCAT 3777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046586619116558