Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq914 122 2e-22 seq915 116 9e-21 seq912 113 1e-19 seq5384 107 5e-18 seq913 95.1 3e-14 seq8974 89.7 1e-12 >seq914 Length=7636 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || |||||||| || || || |||||||||||||| || ||| ||| Sbjct 2523 CAAATCTTTGTCAAGACTCTCACTGGTAAGACTATCACCCTCGAGGTCGAGGCCTCCGAC 2582 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| ||||| || || ||||||||||| || ||||| Sbjct 2583 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCTCCCGATCAGCAG 2642 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 2643 CGTCTGATCTTCGCCGG 2659 >seq915 Length=7668 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| ||||| || |||||||| ||||| || ||| ||| Sbjct 3780 CAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTTGAGGCCTCCGAC 3839 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 3840 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 3899 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 3900 CGTCTCATCTTCGCCGG 3916 >seq912 Length=596 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| ||||||||||||||||| || ||| ||| Sbjct 230 CAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTCGAGGCCTCTGAC 289 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| ||||| || || ||||| || || || ||||| Sbjct 290 ACGATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCTGATCAGCAG 349 Query 178044 CGACTTATCTTCGCCGG 178060 || || || |||||||| Sbjct 350 CGTCTCATTTTCGCCGG 366 >seq5384 Length=661 Score = 107 bits (118), Expect = 5e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 |||||||| ||||| || || ||||||||||||||||||||| ||||| |||||| Sbjct 661 ATCACCCTGGAGGTCGAGGCTTCCGACACCATCGAGAACGTCAAAGCCAAGATCCAGGAC 602 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 || ||||||||||| || || |||||||| || ||||| ||||| Sbjct 601 AAGGAAGGAATCCCCCCTGATCAGCAACGTCTCATCTTTGCCGG 558 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| ||||| ||||||||||||||||| ||| ||| ||| Sbjct 104 CAGATTTTCGTCAAGACCCTCACCGGAAAGACGATCACCCTCGAGGTCGAAGCCTCCGAC 45 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||||||||||||| || ||||| |||||||| || || || Sbjct 44 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCAT 1 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || |||||||| || || || ||||| | || || || ||| ||| Sbjct 401 CAAATCTTTGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGGCCTCGGAC 342 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || || |||||||| || ||||| Sbjct 341 ACCATCGAAAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAGCAG 282 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 281 CGTCTGATCTTCGCTGG 265 >seq913 Length=4471 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||| || ||||| || || || Sbjct 94 CAGATCTTCGTCAAGACACTCACCGGAAAGACTATCACTCTGGAGGTCGAGGCTTCGGAT 153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||||| || ||||| || || || || ||||| Sbjct 154 ACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGATCAGCAG 213 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 214 CGTCTGATCTTTGCCGG 230 >seq8974 Length=654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| ||||| ||||||||||||||||| || || ||| Sbjct 85 CAGATCTTCGTCAAAACTCTCACCGGAAAGACGATCACCCTCGAGGTCGAGGCTTCCGAC 26 Query 177984 ACCATCGAGAACGTCAA 178000 ||||||||||||||||| Sbjct 25 ACCATCGAGAACGTCAA 9 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| ||||| || ||||| | || || || ||| ||| Sbjct 386 CAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTCGAGGCCTCGGAC 327 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 326 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAG 267 Query 178044 CGACTTATCTTCGCCGG 178060 || || || |||||||| Sbjct 266 CGTCTCATTTTCGCCGG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203555734736138