Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq31523 86.0 1e-11 seq71301 84.2 5e-11 seq55610 84.2 5e-11 seq50581 84.2 5e-11 seq27235 84.2 5e-11 seq11186 84.2 5e-11 >seq31523 Length=3718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||| |||| ||||| |||||||||||||||||| ||||||| ||||||||| |||| | Sbjct 557 AAATCGCT-GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGAG 615 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 616 GGTTCGAGCCCC 627 >seq71301 Length=674 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 166 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 225 Query 165769 CCCC 165772 |||| Sbjct 226 CCCC 229 >seq55610 Length=4298 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 170 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 229 Query 165769 CCCC 165772 |||| Sbjct 230 CCCC 233 >seq50581 Length=5724 Score = 84.2 bits (92), Expect = 5e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||||| ||||| |||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 3735 AAACGCC-GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGG 3793 Query 165762 GTTCGAGCCCC 165772 ||||||||||| Sbjct 3794 GTTCGAGCCCC 3804 >seq27235 Length=17903 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 9819 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 9878 Query 165769 CCCC 165772 |||| Sbjct 9879 CCCC 9882 >seq11186 Length=2397 Score = 84.2 bits (92), Expect = 5e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||||| | ||||| |||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 614 AAACG-TCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGG 672 Query 165762 GTTCGAGCCCC 165772 ||||||||||| Sbjct 673 GTTCGAGCCCC 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056823951041180