Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq44731 152 5e-32 >seq44731 Length=5866 Score = 152 bits (168), Expect = 5e-32 Identities = 147/187 (79%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| |||||||||| ||||||||| |||||||||| | ||||||| |||||| || Sbjct 3604 TCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCGCCGACGAAGAGGCCTCCTTCGCCG 3545 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 || | | | || ||||| ||||||||||| | ||||| || || |||||| ||| Sbjct 3544 AGAGAGTCATCGCATTCGCCGCCGTCGAGGGAATATTCTTCTCCGGGTCCTTCGCCTCCA 3485 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG--CAACGAGCTCAT 117153 | |||||||||||||| ||||| || |||||||| || || ||| |||||||||||| Sbjct 3484 TCTTTTGGCTCAAGAAGCGCGGGCTTATGCCCGGGCTCACC--CAGTCCAACGAGCTCAT 3427 Query 117154 CTCCAGG 117160 ||||||| Sbjct 3426 CTCCAGG 3420 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||| ||| | |||| || ||||| | ||||| |||| ||||||||| || Sbjct 3817 TCAGGTTGAGCGATTCTCGAAGGAAGTCCAGGTCTCTGAGGCCCGGTTCTTCTACGGATT 3758 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||||||| |||||| | || || || ||||| | |||||||| || ||| Sbjct 3757 CCAGATCGCCATTGAGAACATCCATTCTGAGATGTACAGCAAGCTCATCGAGACCTAC 3700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514744000451360