Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2257 134 1e-26 seq44731 93.3 4e-14 seq17487 91.5 1e-13 >seq2257 Length=6083 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || |||||||| | ||| || || |||||| |||||||| | | ||||||| Sbjct 2826 TCATGAAGAGATCCGGAACCCAGAGGGCCAGGAACAGATCGCGGGCCCTCTCCTCCTCAG 2767 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 || |||||||| ||| || || || || | ||||| ||||| |||||||||| Sbjct 2766 GCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAGATATCCGCGTGCCAGGGCTCGAGGT 2707 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 | | ||| || || ||||| | ||| ||||| |||||||| ||||| || || ||||||| Sbjct 2706 AGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCCTGATCCACGTAGCGAGCGGTGTTGT 2647 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 |||| || | ||||| || | || ||||| || Sbjct 2646 TGTAGACACGGAGCATGGGGATCAGTCCGTTCGA 2613 >seq44731 Length=5866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 |||| | ||||||||||| | ||||| |||||||||||||| || |||||||| || || Sbjct 3558 GGCCTCCTTCGCCGAGAGAGTCATCGCATTCGCCGCCGTCGAGGGAATATTCTTCTCCGG 3499 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 ||| || | || |||||| | ||||| ||||| || |||||||| || || Sbjct 3498 GTCCTTCGCCTCCATCTTTTGGCTCAAGAAGCGCGGGCTTATGCCCGGGCTCAC 3445 >seq17487 Length=3481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || || || ||||| |||| ||||| | ||| Sbjct 295 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAGACTATCACTCTCGAGGTTGAGGCCTCC 236 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || ||||||||| || | || ||||| ||| Sbjct 235 GACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCCGATCAG 176 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||||| || |||||||| Sbjct 175 CAGCGTCTGATCTTCGCTGG 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445355258505120