Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2257 122 1e-22 seq44731 96.9 5e-15 >seq2257 Length=6083 Score = 122 bits (134), Expect = 1e-22 Identities = 214/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| |||||||| || | ||||| ||| || || || || ||||||| | | Sbjct 2911 TCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCC 2852 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || |||||||| || | ||||| |||||||| |||| ||| || || | || Sbjct 2851 CAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAAC 2792 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||| | || || | ||||| || || ||||| | || | |||| | | Sbjct 2791 AGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAG 2732 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 ||||| ||||| || || | ||| ||||| | |||| || || ||||| |||||| Sbjct 2731 ATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCC 2672 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | ||| | ||||||||| || || || | | ||| || || | || || || Sbjct 2671 TGATCCACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAG 2612 Query 66282 GTACCATTGGTC 66293 ||||| |||||| Sbjct 2611 GTACCGTTGGTC 2600 >seq44731 Length=5866 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 |||||||| ||||| |||||||| || || ||||| || |||||||| ||||| || Sbjct 3433 TCGTTGGACTGGGTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATGGAGGCG 3492 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || || || || ||||| ||||| || || || || || || || | |||||| | | Sbjct 3493 AAGGACCCGGAGAAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCGGCGAAG 3552 Query 36320 CCGGCA-CT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 ||| || ||| |||||||| | ||||| ||||||||||| || | |||||| Sbjct 3553 GAGGCCTCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATACAAGG 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657565750772240