Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2257 140 5e-28 seq44731 102 1e-16 >seq2257 Length=6083 Score = 140 bits (154), Expect = 5e-28 Identities = 218/312 (70%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || ||||| |||||||| || ||||| | ||| || || ||| || ||||||| | | Sbjct 2911 TCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCC 2852 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || | |||||| || | ||||| |||||||| |||| ||| || || | || Sbjct 2851 CAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAAC 2792 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 ||||| | || || | |||||| || || ||||| | || | |||| | | Sbjct 2791 AGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAG 2732 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 ||||| | ||||| || || | ||| ||||| | ||||||| || ||||| |||||| Sbjct 2731 ATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCC 2672 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 ||||| | ||| | ||||||||| || || || | | ||| || || | || || || Sbjct 2671 TGATCCACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAG 2612 Query 80161 GTACCATTGGTC 80172 ||||| |||||| Sbjct 2611 GTACCGTTGGTC 2600 >seq44731 Length=5866 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || || |||||||| ||||| |||||||| || || ||||| || |||||||| ||| Sbjct 3427 ATGAGCTCGTTGGACTGGGTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATG 3486 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || || || ||||| || ||||| ||||| || || ||||| || || | | |||||| Sbjct 3487 GAGGCGAAGGACCCGGAGAAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCG 3546 Query 50116 CCATAACTGGCG-CT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172 | | ||| || ||| |||||||| | ||||| ||||||||||| || | | Sbjct 3547 GCGAAGGAGGCCTCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATA 3606 Query 50173 CAAGG 50177 ||||| Sbjct 3607 CAAGG 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717606322729040