Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2257 116 5e-21 seq44731 91.5 2e-13 >seq2257 Length=6083 Score = 116 bits (128), Expect = 5e-21 Identities = 213/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||||| |||||||| | | ||| | ||| || || || || ||||||| | | Sbjct 2911 TCAAACTCCTCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCC 2852 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || || | ||||| || | ||||| |||||||| |||| ||| || || | || Sbjct 2851 CAGTCGGCGTCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAAC 2792 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | || || | |||||| || || ||||| | || | |||| | | Sbjct 2791 AGATCGCGGGCCCTCTCCTCCTCAGGCCCAGTGTTCTTCCTCAGCGACACGAACTCAAAG 2732 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||| | ||||| || || | ||| ||||| | ||||||| || ||||| |||||| Sbjct 2731 ATATCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCC 2672 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | ||| | ||||||||| || || || | | ||| || || | || || || Sbjct 2671 TGATCCACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAG 2612 Query 72244 GCACCATTGGTC 72255 | ||| |||||| Sbjct 2611 GTACCGTTGGTC 2600 >seq44731 Length=5866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 |||||||| ||||| |||||||| || || ||||| || |||||||| || || || Sbjct 3433 TCGTTGGACTGGGTGAGCCCGGGCATAAGCCCGCGCTTCTTGAGCCAAAAGATGGAGGCG 3492 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || || || || ||||| ||||| || || || || || || || | |||||| | | Sbjct 3493 AAGGACCCGGAGAAGAATATTCCCTCGACGGCGGCGAATGCGATGACTCTCTCGGCGAAG 3552 Query 42227 CCGGCA-CT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 ||| || ||| |||||||| | ||||| ||||||||||| || | |||||| Sbjct 3553 GAGGCCTCTTCGTCGGCGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGATACAAGG 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670520191537360