Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq44731 111 2e-19 seq2257 91.5 2e-13 >seq44731 Length=5866 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| | |||| | | |||||||| ||||| || | || | |||||| ||| Sbjct 3599 AAGAAGGCCGACTGGGCGCTGAAGTGGATCGCCGACGAAGAGGCCTCCTTCGCCGAGAGA 3540 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 | | |||||||||||||| ||||| || ||||| || || || || |||||||| Sbjct 3539 GTCATCGCATTCGCCGCCGTCGAGGGAATATTCTTCTCCGGGTCCTTCGCCTCCATCTTT 3480 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||||||||||||||||| || |||||||| || || || |||||| | || || Sbjct 3479 TGGCTCAAGAAGCGCGGGCTTATGCCCGGGCTCACCCAGTCCAACGAGCTCATCTC 3424 >seq2257 Length=6083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || ||||||||||| Sbjct 2670 CAGGGAGGCAACAAGCGTCCGGGAGCCTTCGCCATCTACCTCGAGCCCTGGCACGCGGAT 2729 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | ||||| || | | || | || ||| |||| ||| |||| | ||| | || Sbjct 2730 ATCTTTGAGTTCGTGTCGCTGAGGAAGAACACTGGGCCTGAGGAGGAGAGGGCCCGCGAT 2789 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || |||||||| || ||| | ||||||||| | || || | | | || Sbjct 2790 CTGTTCCTGGCCCTCTGGGTTCCGGATCTCTTCATGAAGAGGGTTTCGGATGACGCCGAC 2849 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| ||| ||||||||| | || ||||| ||| ||| |||||| || |||||| Sbjct 2850 TGGGCCCTGATGTGCCCCCGCGAGTGCCCCGGACTGGACGACGTCTGGGGAGAGGAGTTT 2909 Query 97116 GAG 97118 ||| Sbjct 2910 GAG 2912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740375702573360